Variant report

Variant	rs11923746
Chromosome Location	chr3:111679279-111679280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111673398..111675283-chr3:111676915..111679475,3	MCF-7	breast:

rs_ID	r²[population]
rs11921814	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16858901	0.84[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6783948	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs712520	1.00[EUR][1000 genomes]
rs712521	1.00[EUR][1000 genomes]

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111637200-111690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:111642200-111690400	Weak transcription	Spleen	Spleen
3	chr3:111645400-111689600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:111652400-111685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:111653000-111686200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:111654400-111695000	Strong transcription	Placenta	Placenta
7	chr3:111657200-111682000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:111658600-111697400	Weak transcription	Gastric	stomach
9	chr3:111658800-111685800	Weak transcription	HepG2	liver
10	chr3:111661600-111689800	Weak transcription	Ovary	ovary
11	chr3:111663000-111681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:111663800-111681200	Strong transcription	NHEK	skin
13	chr3:111666600-111697400	Weak transcription	Esophagus	oesophagus
14	chr3:111670800-111685000	Strong transcription	Liver	Liver
15	chr3:111671000-111681800	Strong transcription	NH-A	brain
16	chr3:111671200-111680800	Weak transcription	A549	lung
17	chr3:111672800-111686000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:111673000-111680000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:111673000-111680600	Weak transcription	Fetal Intestine Large	intestine
20	chr3:111673000-111681800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:111673000-111682000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:111673000-111688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:111673000-111688400	Weak transcription	Fetal Stomach	stomach
24	chr3:111673000-111697400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:111673000-111697400	Weak transcription	Pancreas	Pancrea
26	chr3:111673400-111679400	Weak transcription	Fetal Heart	heart
27	chr3:111673400-111681200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:111673400-111681800	Strong transcription	Osteobl	bone
29	chr3:111673600-111686000	Weak transcription	Fetal Kidney	kidney
30	chr3:111673800-111680400	Weak transcription	Hela-S3	cervix
31	chr3:111673800-111680800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:111673800-111682000	Weak transcription	NHLF	lung
33	chr3:111675000-111680600	Weak transcription	Fetal Muscle Leg	muscle
34	chr3:111675000-111682600	Weak transcription	Colon Smooth Muscle	Colon
35	chr3:111675000-111697400	Weak transcription	Lung	lung
36	chr3:111675600-111680200	Weak transcription	NHDF-Ad	bronchial
37	chr3:111675800-111685200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:111676200-111680200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr3:111676400-111681800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:111676600-111680600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr3:111676600-111682000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:111676800-111685800	Weak transcription	Fetal Lung	lung
43	chr3:111677000-111679600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:111677200-111680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:111677200-111681600	Strong transcription	HMEC	breast
46	chr3:111677400-111680600	Weak transcription	HSMM	muscle
47	chr3:111677600-111681400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:111678000-111680400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:111678000-111680400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr3:111678000-111680600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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