Variant report

Variant	rs6158
Chromosome Location	chr8:67090553-67090554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67088502..67091443-chr8:67341463..67343865,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58396472	1.00[AMR][1000 genomes]
rs7827692	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7840087	1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67088800-67090600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
2	chr8:67089600-67090600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
3	chr8:67089800-67090600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
4	chr8:67089800-67090600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
5	chr8:67089800-67090600	Bivalent Enhancer	Esophagus	oesophagus
6	chr8:67089800-67090600	Enhancers	Lung	lung
7	chr8:67089800-67090600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
8	chr8:67089800-67090800	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr8:67090000-67090600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr8:67090000-67090600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr8:67090000-67090600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:67090000-67090600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:67090000-67090600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:67090000-67090600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:67090000-67090600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
16	chr8:67090000-67090600	Enhancers	Gastric	stomach
17	chr8:67090000-67090600	Enhancers	Pancreas	Pancrea
18	chr8:67090000-67090800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr8:67090000-67090800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr8:67090000-67090800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr8:67090000-67090800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr8:67090000-67091000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
24	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:67090200-67090600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:67090200-67090600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:67090200-67090600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:67090200-67090600	Bivalent Enhancer	Adipose Nuclei	Adipose
31	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:67090200-67090600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
33	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	Placenta	Placenta
34	chr8:67090200-67090600	Flanking Bivalent TSS/Enh	A549	lung
35	chr8:67090200-67090600	Bivalent Enhancer	HMEC	breast
36	chr8:67090200-67090600	Bivalent Enhancer	NHDF-Ad	bronchial
37	chr8:67090200-67090800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:67090200-67090800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
39	chr8:67090200-67090800	Bivalent Enhancer	Brain Angular Gyrus	brain
40	chr8:67090400-67090600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
41	chr8:67090400-67090600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:67090400-67090600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr8:67090400-67090600	Bivalent/Poised TSS	NH-A	brain
44	chr8:67090400-67090600	Bivalent/Poised TSS	NHLF	lung
45	chr8:67090400-67090800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
46	chr8:67090400-67090800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:67090400-67090800	Bivalent Enhancer	Fetal Brain Male	brain
48	chr8:67090400-67090800	Bivalent/Poised TSS	Fetal Brain Female	brain
49	chr8:67090400-67090800	Bivalent Enhancer	Fetal Heart	heart
50	chr8:67090400-67091200	Active TSS	Pancreatic Islets	Pancreatic Islet

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