Variant report

Variant	rs7840087
Chromosome Location	chr8:67053574-67053575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67025222..67027125-chr8:67051798..67053628,2	MCF-7	breast:
2	chr8:67053342..67054592-chr8:67089110..67089727,3	MCF-7	breast:
3	chr8:67046137..67048325-chr8:67052622..67055145,2	K562	blood:
4	chr8:67053287..67054191-chr8:67333871..67334680,3	MCF-7	breast:
5	chr8:67052382..67055131-chr8:67068247..67071130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58396472	1.00[AMR][1000 genomes]
rs6158	1.00[LWK][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs7827692	1.00[AMR][1000 genomes]
rs7832858	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67044000-67057800	Weak transcription	Liver	Liver
3	chr8:67047600-67055000	Genic enhancers	HSMMtube	muscle
4	chr8:67049400-67053800	Enhancers	Left Ventricle	heart
5	chr8:67049800-67055800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr8:67050200-67058200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:67050400-67053800	Weak transcription	Right Atrium	heart
8	chr8:67051800-67054200	Weak transcription	K562	blood
9	chr8:67051800-67058000	Strong transcription	HSMM	muscle
10	chr8:67051800-67059600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:67051800-67066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:67052400-67055200	Enhancers	Fetal Muscle Leg	muscle
13	chr8:67052600-67054000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr8:67052600-67055800	Enhancers	Right Ventricle	heart
15	chr8:67052800-67053800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:67052800-67053800	Enhancers	Fetal Muscle Trunk	muscle
17	chr8:67052800-67054000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr8:67053000-67053800	Enhancers	Thymus	Thymus
19	chr8:67053000-67055600	Enhancers	Psoas Muscle	Psoas
20	chr8:67053000-67055800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:67053400-67054000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:67053400-67054400	Enhancers	Fetal Heart	heart
23	chr8:67053400-67056000	Enhancers	Dnd41	blood
24	chr8:67053400-67066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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