Variant report

Variant	rs61586263
Chromosome Location	chr3:133820030-133820031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56183458	1.00[AMR][1000 genomes]
rs56406923	1.00[AMR][1000 genomes]
rs57032924	0.91[AFR][1000 genomes]
rs59392151	1.00[AMR][1000 genomes]
rs60370675	1.00[AMR][1000 genomes]
rs60996372	1.00[AMR][1000 genomes]
rs61387165	0.80[AFR][1000 genomes]
rs61616399	1.00[AMR][1000 genomes]
rs6767331	0.85[AFR][1000 genomes]
rs6771052	0.80[AFR][1000 genomes]
rs6792002	0.85[AFR][1000 genomes]
rs72982345	1.00[AMR][1000 genomes]
rs72982347	1.00[AMR][1000 genomes]
rs72982357	0.88[AFR][1000 genomes]
rs72982362	0.94[AFR][1000 genomes]
rs72982375	0.82[AFR][1000 genomes]
rs72984466	0.91[AFR][1000 genomes]
rs72984483	0.85[AFR][1000 genomes]
rs72984488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72986405	0.80[AFR][1000 genomes]
rs7653175	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965344	chr3:133805086-133862489	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133813000-133820200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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