Variant report

Variant	rs6792002
Chromosome Location	chr3:133980264-133980265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4613428	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032924	0.88[AFR][1000 genomes]
rs59757921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61387165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61586263	0.85[AFR][1000 genomes]
rs6767331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771052	0.88[AFR][1000 genomes]
rs72984466	0.88[AFR][1000 genomes]
rs72984483	0.94[AFR][1000 genomes]
rs72984488	0.94[AFR][1000 genomes]
rs72984501	0.86[AFR][1000 genomes]
rs72986403	0.86[AFR][1000 genomes]
rs72986405	0.88[AFR][1000 genomes]
rs72986428	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72986432	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133979400-133980400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:133979400-133980800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:133979400-133981000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:133979600-133980400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:133979600-133980400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr3:133979600-133980600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:133979600-133980800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:133979600-133980800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:133979600-133981000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:133979600-133981000	Enhancers	Hela-S3	cervix
11	chr3:133979800-133981000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr3:133979800-133981000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:133980000-133980400	Enhancers	HepG2	liver
14	chr3:133980000-133980800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:133980200-133980400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr3:133980200-133980400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:133980200-133980400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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