Variant report

Variant	rs61586803
Chromosome Location	chr1:152915330-152915331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs58205924	1.00[AFR][1000 genomes]
rs58483211	0.87[AFR][1000 genomes]
rs59733655	0.93[AFR][1000 genomes]
rs61621607	1.00[AFR][1000 genomes]
rs73008539	0.87[AFR][1000 genomes]
rs73008540	0.87[AFR][1000 genomes]
rs73008542	0.87[AFR][1000 genomes]
rs73008543	0.87[AFR][1000 genomes]
rs73008545	0.87[AFR][1000 genomes]
rs73008547	0.87[AFR][1000 genomes]
rs73008549	0.93[AFR][1000 genomes]
rs73008550	0.85[AFR][1000 genomes]
rs73008551	0.93[AFR][1000 genomes]
rs73008556	1.00[AFR][1000 genomes]
rs73008557	1.00[AFR][1000 genomes]
rs73008561	1.00[AFR][1000 genomes]
rs73008569	1.00[AFR][1000 genomes]
rs73008570	1.00[AFR][1000 genomes]
rs73008575	1.00[AFR][1000 genomes]
rs73008578	1.00[AFR][1000 genomes]
rs73008580	1.00[AFR][1000 genomes]
rs73008582	1.00[AFR][1000 genomes]
rs73008589	0.93[AFR][1000 genomes]
rs73008590	0.93[AFR][1000 genomes]
rs73008591	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv831592	chr1:152815054-152997162	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv998873	chr1:152869127-152975258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
8	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152913000-152915600	Enhancers	Liver	Liver
2	chr1:152914200-152916200	Weak transcription	Esophagus	oesophagus
3	chr1:152914800-152916000	Weak transcription	HMEC	breast
4	chr1:152914800-152918400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:152914800-152918400	Weak transcription	NHEK	skin
6	chr1:152915000-152917600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:152915200-152916200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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