Variant report
| Variant | rs61606645 |
|---|---|
| Chromosome Location | chr12:40582955-40582956 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLC2A13-2 | chr12:40582885-40583007 | XLOC_010053 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs17519832 | 1.00[AMR][1000 genomes] |
| rs56701518 | 1.00[AMR][1000 genomes] |
| rs57032064 | 1.00[AMR][1000 genomes] |
| rs57315777 | 1.00[AMR][1000 genomes] |
| rs58793646 | 1.00[AMR][1000 genomes] |
| rs60242724 | 1.00[AMR][1000 genomes] |
| rs7314641 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73263847 | 1.00[AMR][1000 genomes] |
| rs73263851 | 1.00[AMR][1000 genomes] |
| rs73263859 | 1.00[AMR][1000 genomes] |
| rs73263869 | 1.00[AMR][1000 genomes] |
| rs73263871 | 1.00[AMR][1000 genomes] |
| rs73267627 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73268078 | 1.00[AMR][1000 genomes] |
| rs73268087 | 1.00[AMR][1000 genomes] |
| rs73269827 | 1.00[AMR][1000 genomes] |
| rs73274845 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73274869 | 1.00[AMR][1000 genomes] |
| rs73274870 | 1.00[AMR][1000 genomes] |
| rs73275726 | 1.00[AMR][1000 genomes] |
| rs73276871 | 1.00[AMR][1000 genomes] |
| rs73276887 | 1.00[AMR][1000 genomes] |
| rs73276892 | 1.00[AMR][1000 genomes] |
| rs73276895 | 1.00[AMR][1000 genomes] |
| rs73276896 | 1.00[AMR][1000 genomes] |
| rs73277541 | 1.00[AMR][1000 genomes] |
| rs74078731 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv558596 | chr12:40413698-40591117 | Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045516 | chr12:40543200-40589557 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | n/a |
| 3 | nsv1044685 | chr12:40574460-40771612 | Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40582200-40584800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
