Variant report

Variant	rs73274870
Chromosome Location	chr12:40596547-40596548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17519832	1.00[AMR][1000 genomes]
rs56701518	1.00[AMR][1000 genomes]
rs57032064	1.00[AMR][1000 genomes]
rs57315777	1.00[AMR][1000 genomes]
rs58793646	1.00[AMR][1000 genomes]
rs60242724	1.00[AMR][1000 genomes]
rs61606645	1.00[AMR][1000 genomes]
rs7314641	1.00[AMR][1000 genomes]
rs73263847	1.00[AMR][1000 genomes]
rs73263851	1.00[AMR][1000 genomes]
rs73263859	1.00[AMR][1000 genomes]
rs73263869	1.00[AMR][1000 genomes]
rs73263871	1.00[AMR][1000 genomes]
rs73267627	1.00[AMR][1000 genomes]
rs73268078	1.00[AMR][1000 genomes]
rs73268087	1.00[AMR][1000 genomes]
rs73269827	1.00[AMR][1000 genomes]
rs73274845	1.00[AMR][1000 genomes]
rs73274869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73275726	1.00[AMR][1000 genomes]
rs73276871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276887	1.00[AMR][1000 genomes]
rs73276892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276895	1.00[AMR][1000 genomes]
rs73276896	1.00[AMR][1000 genomes]
rs73277541	1.00[AMR][1000 genomes]
rs73279548	1.00[AMR][1000 genomes]
rs74078731	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40590400-40596600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:40594600-40597200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:40595200-40597200	Enhancers	Primary hematopoietic stem cells	blood
4	chr12:40595200-40597200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:40595200-40597600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:40595400-40597200	Enhancers	Primary B cells from cord blood	blood
7	chr12:40595600-40597000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr12:40595600-40597000	Enhancers	HUVEC	blood vessel
9	chr12:40595600-40597200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:40596400-40596800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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