Variant report
| Variant | rs61607345 |
|---|---|
| Chromosome Location | chr19:40086106-40086107 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | REST | chr19:40085751-40092211 | PANC-1 | pancreas: | n/a | chr19:40089953-40089973 chr19:40089956-40089969 chr19:40089958-40089967 chr19:40089953-40089973 chr19:40089953-40089966 chr19:40089954-40089972 chr19:40089959-40089973 chr19:40089953-40089962 chr19:40089961-40089971 chr19:40089956-40089969 chr19:40089953-40089973 |
| 2 | REST | chr19:40085749-40093889 | PANC-1 | pancreas: | n/a | chr19:40089953-40089973 chr19:40089956-40089969 chr19:40089958-40089967 chr19:40089953-40089973 chr19:40092973-40092991 chr19:40089953-40089966 chr19:40089954-40089972 chr19:40093618-40093636 chr19:40089959-40089973 chr19:40089953-40089962 chr19:40089961-40089971 chr19:40089956-40089969 chr19:40089953-40089973 |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPS29P26 | TF binding region |
| ENSG00000105198 | Chromatin interaction |
| ENSG00000239320 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10401220 | 0.98[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs10404254 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10406418 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10409199 | 0.86[AFR][1000 genomes] |
| rs10411410 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10417116 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs10417553 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10418704 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10419137 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10421338 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10425352 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13347073 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61705840 | 1.00[AMR][1000 genomes] |
| rs7260050 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8110529 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8113631 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060251 | chr19:39982988-40099773 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv579509 | chr19:40004640-40133438 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 3 | esv34120 | chr19:40044635-40131820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
