Variant report
| Variant | rs61705840 |
|---|---|
| Chromosome Location | chr19:40083585-40083586 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:40080859..40083652-chr19:40087227..40090109,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000239320 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10401220 | 0.83[AMR][1000 genomes] |
| rs10404254 | 1.00[AMR][1000 genomes] |
| rs10406418 | 1.00[AMR][1000 genomes] |
| rs10411410 | 1.00[AMR][1000 genomes] |
| rs10417116 | 0.83[AMR][1000 genomes] |
| rs10417553 | 1.00[AMR][1000 genomes] |
| rs10418704 | 1.00[AMR][1000 genomes] |
| rs10419137 | 1.00[AMR][1000 genomes] |
| rs10421338 | 1.00[AMR][1000 genomes] |
| rs10425352 | 1.00[AMR][1000 genomes] |
| rs13347073 | 1.00[AMR][1000 genomes] |
| rs61607345 | 1.00[AMR][1000 genomes] |
| rs7260050 | 1.00[AMR][1000 genomes] |
| rs8110529 | 1.00[AMR][1000 genomes] |
| rs8113631 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060251 | chr19:39982988-40099773 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv579509 | chr19:40004640-40133438 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 3 | esv34120 | chr19:40044635-40131820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
