Variant report

Variant	rs61612725
Chromosome Location	chr8:122397941-122397942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10102254	1.00[EUR][1000 genomes]
rs16895373	1.00[EUR][1000 genomes]
rs4552906	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57302520	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58805546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59584500	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60058801	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6989638	1.00[EUR][1000 genomes]
rs73330290	1.00[EUR][1000 genomes]
rs73332307	1.00[EUR][1000 genomes]
rs73332311	1.00[EUR][1000 genomes]
rs73334307	1.00[EUR][1000 genomes]
rs73707572	1.00[EUR][1000 genomes]
rs73707599	1.00[EUR][1000 genomes]
rs73707602	1.00[EUR][1000 genomes]
rs73709809	1.00[EUR][1000 genomes]
rs7814136	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465792	chr8:122329373-122398867	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv612131	chr8:122329373-122398867	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1808330	chr8:122385614-122415509	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2755780	chr8:122393819-122426819	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1027842	chr8:122394235-122427343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122394200-122405200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:122395400-122400400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:122397200-122400400	Weak transcription	Osteobl	bone
4	chr8:122397200-122400600	Weak transcription	Adipose Nuclei	Adipose
5	chr8:122397600-122398600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:122397600-122400200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:122397600-122400600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:122397800-122399800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:122397800-122400200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:122397800-122400200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:122397800-122400200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:122397800-122410000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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