Variant report
| Variant | rs61617377 |
|---|---|
| Chromosome Location | chr3:113247626-113247627 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:113229615..113239929-chr3:113247196..113257849,45 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SIDT1 | TF binding region |
| ENSG00000163611 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs57188651 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58500233 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58992191 | 0.82[EUR][1000 genomes] |
| rs59719772 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60633405 | 0.82[EUR][1000 genomes] |
| rs61187530 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61469498 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950843 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950844 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950845 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950848 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950850 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950858 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72950860 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950862 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950865 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950869 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72950870 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013506 | chr3:112890608-113680951 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv1004000 | chr3:113116778-113513899 | Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 3 | nsv877349 | chr3:113208224-113323787 | Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv877350 | chr3:113208224-113332235 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
