Variant report

Variant	rs60633405
Chromosome Location	chr3:113239358-113239359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113216822..113219310-chr3:113237513..113239458,2	MCF-7	breast:
2	chr3:113229615..113239929-chr3:113247196..113257849,45	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072858	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2306792	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57006145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57188651	0.82[EUR][1000 genomes]
rs57357573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57414437	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57591967	1.00[AMR][1000 genomes]
rs57797139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58248101	0.87[AMR][1000 genomes]
rs58500233	0.82[EUR][1000 genomes]
rs58551767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58890779	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58992191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59275119	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59719772	0.82[EUR][1000 genomes]
rs59911537	0.87[AMR][1000 genomes]
rs60874642	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61151383	0.87[AMR][1000 genomes]
rs61187530	0.82[EUR][1000 genomes]
rs61258912	0.87[AMR][1000 genomes]
rs61469498	0.82[EUR][1000 genomes]
rs61617377	0.82[EUR][1000 genomes]
rs6780086	0.87[AMR][1000 genomes]
rs72950843	0.82[EUR][1000 genomes]
rs72950844	0.82[EUR][1000 genomes]
rs72950845	0.82[EUR][1000 genomes]
rs72950848	0.82[EUR][1000 genomes]
rs72950850	0.82[EUR][1000 genomes]
rs72950860	0.82[EUR][1000 genomes]
rs72950862	0.82[EUR][1000 genomes]
rs72950865	0.82[EUR][1000 genomes]
rs72950869	0.82[EUR][1000 genomes]
rs72950870	0.82[EUR][1000 genomes]
rs7612448	0.91[ASN][1000 genomes]
rs7619717	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links