The 2.0 version of rSNPBase

Variant report

Variant rs6780086
Chromosome Location chr3:113158120-113158121
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:113074400-113184400 Weak transcription Hela-S3 cervix
2 chr3:113109200-113159800 Weak transcription Brain Hippocampus Middle brain
3 chr3:113134600-113159800 Weak transcription Fetal Muscle Trunk muscle
4 chr3:113135200-113164600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr3:113136000-113176400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
6 chr3:113137400-113160000 Weak transcription Fetal Stomach stomach
7 chr3:113140000-113160000 Weak transcription Psoas Muscle Psoas
8 chr3:113145800-113159400 Weak transcription Gastric stomach
9 chr3:113145800-113159400 Weak transcription HSMMtube muscle
10 chr3:113145800-113159600 Weak transcription Lung lung
11 chr3:113145800-113159800 Weak transcription Esophagus oesophagus
12 chr3:113145800-113159800 Weak transcription Fetal Muscle Leg muscle
13 chr3:113145800-113159800 Weak transcription Stomach Smooth Muscle stomach
14 chr3:113145800-113159800 Weak transcription Thymus Thymus
15 chr3:113145800-113160000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr3:113145800-113160200 Weak transcription Aorta Aorta
17 chr3:113145800-113166000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr3:113145800-113176600 Weak transcription Spleen Spleen
19 chr3:113146000-113159800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr3:113146000-113160000 Weak transcription Primary monocytes fromperipheralblood blood
21 chr3:113146000-113160000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr3:113146000-113160200 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr3:113146000-113172000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
24 chr3:113146000-113191000 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr3:113146200-113159600 Weak transcription Primary B cells from peripheral blood blood
26 chr3:113146200-113159600 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr3:113146200-113159600 Weak transcription Dnd41 blood
28 chr3:113146200-113160000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr3:113146200-113160000 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr3:113146200-113160200 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr3:113146200-113178600 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr3:113146400-113159000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr3:113146400-113160000 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr3:113146400-113165000 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr3:113147000-113159800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr3:113147000-113159800 Weak transcription Adipose Nuclei Adipose
37 chr3:113147000-113165600 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr3:113147200-113159400 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr3:113147200-113159600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr3:113147200-113160200 Weak transcription Primary hematopoietic stem cells blood
41 chr3:113147400-113159800 Weak transcription Primary T cells fromperipheralblood blood
42 chr3:113147400-113165400 Weak transcription Primary T helper naive cells fromperipheralblood blood
43 chr3:113147600-113159400 Weak transcription A549 lung
44 chr3:113147600-113160400 Weak transcription Primary T helper cells PMA-I stimulated --
45 chr3:113147600-113162400 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr3:113147800-113159600 Weak transcription Pancreas Pancrea
47 chr3:113147800-113159800 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr3:113147800-113159800 Weak transcription Ovary ovary
49 chr3:113147800-113178800 Weak transcription HSMM muscle
50 chr3:113148000-113159200 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015