Variant report

Variant	rs61628190
Chromosome Location	chr7:99542544-99542545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99515531..99518710-chr7:99542097..99545437,4	MCF-7	breast:
2	chr7:99536487..99537988-chr7:99540630..99543406,2	K562	blood:
3	chr7:99535893..99538781-chr7:99539632..99543406,4	K562	blood:

Variant related genes	Relation type
ENSG00000146833	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17161888	1.00[AMR][1000 genomes]
rs57028043	1.00[AMR][1000 genomes]
rs57128906	1.00[AMR][1000 genomes]
rs57263854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403878	1.00[AMR][1000 genomes]
rs58602971	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58604532	1.00[AMR][1000 genomes]
rs58730747	1.00[AMR][1000 genomes]
rs59053341	1.00[AMR][1000 genomes]
rs59687495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59900957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60305755	1.00[AMR][1000 genomes]
rs60684015	1.00[AMR][1000 genomes]
rs60692359	1.00[AMR][1000 genomes]
rs61648592	1.00[AMR][1000 genomes]
rs61687460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742750	1.00[AMR][1000 genomes]
rs73393662	1.00[AMR][1000 genomes]
rs73395957	1.00[AMR][1000 genomes]
rs73397512	1.00[AMR][1000 genomes]
rs73403599	1.00[AMR][1000 genomes]
rs73405419	1.00[AMR][1000 genomes]
rs73405431	1.00[AMR][1000 genomes]
rs73405465	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409503	1.00[AMR][1000 genomes]
rs73409509	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409513	1.00[AMR][1000 genomes]
rs73409528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409546	1.00[AMR][1000 genomes]
rs73409549	1.00[AMR][1000 genomes]
rs73409550	1.00[AMR][1000 genomes]
rs73409552	1.00[AMR][1000 genomes]
rs73411424	1.00[AMR][1000 genomes]
rs73411425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
4	nsv607930	chr7:99525241-99602191	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv1828362	chr7:99530233-99628773	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv888772	chr7:99533178-99602191	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99532400-99548000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:99541000-99542800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr7:99541000-99543200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:99541400-99542600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr7:99541600-99542600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:99541600-99542600	Enhancers	Primary B cells from cord blood	blood
7	chr7:99541800-99542600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:99541800-99543800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:99542000-99543000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:99542000-99543200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:99542000-99545200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr7:99542200-99542800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr7:99542200-99542800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr7:99542200-99543000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:99542200-99543000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:99542400-99542800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr7:99542400-99542800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr7:99542400-99543000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:99542400-99543000	Enhancers	HUES64 Cell Line	embryonic stem cell

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