Variant report

Variant	rs73405474
Chromosome Location	chr7:99532780-99532781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:99532628-99532985	K562	blood:	n/a	n/a
2	ZBTB33	chr7:99532750-99533024	K562	blood:	n/a	n/a
3	MAX	chr7:99532695-99532878	K562	blood:	n/a	n/a
4	POLR2A	chr7:99532715-99533882	K562	blood:	n/a	n/a
5	CHD2	chr7:99532710-99533089	K562	blood:	n/a	n/a
6	MYC	chr7:99532707-99532859	K562	blood:	n/a	n/a
7	ZNF384	chr7:99532686-99533085	K562	blood:	n/a	n/a
8	MYC	chr7:99532646-99533012	K562	blood:	n/a	n/a
9	MAX	chr7:99532413-99532956	K562	blood:	n/a	n/a
10	MYC	chr7:99532464-99533024	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99514587..99517118-chr7:99532304..99534138,2	MCF-7	breast:
2	chr7:99525458..99527958-chr7:99530669..99532875,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199711	TF binding region
ENSG00000146833	Chromatin interaction
ENSG00000237640	Chromatin interaction
ENSG00000176402	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17161888	1.00[AMR][1000 genomes]
rs57028043	1.00[AMR][1000 genomes]
rs57128906	1.00[AMR][1000 genomes]
rs57263854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403878	1.00[AMR][1000 genomes]
rs58602971	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58604532	1.00[AMR][1000 genomes]
rs58730747	1.00[AMR][1000 genomes]
rs59053341	1.00[AMR][1000 genomes]
rs59687495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59900957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60305755	1.00[AMR][1000 genomes]
rs60684015	1.00[AMR][1000 genomes]
rs60692359	1.00[AMR][1000 genomes]
rs61628190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61648592	1.00[AMR][1000 genomes]
rs61687460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742750	1.00[AMR][1000 genomes]
rs73393662	1.00[AMR][1000 genomes]
rs73395957	1.00[AMR][1000 genomes]
rs73403599	1.00[AMR][1000 genomes]
rs73405419	1.00[AMR][1000 genomes]
rs73405431	1.00[AMR][1000 genomes]
rs73405465	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409503	1.00[AMR][1000 genomes]
rs73409509	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409513	1.00[AMR][1000 genomes]
rs73409528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73409546	1.00[AMR][1000 genomes]
rs73409549	1.00[AMR][1000 genomes]
rs73409550	1.00[AMR][1000 genomes]
rs73409552	1.00[AMR][1000 genomes]
rs73411424	1.00[AMR][1000 genomes]
rs73411425	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases
4	nsv607930	chr7:99525241-99602191	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv1828362	chr7:99530233-99628773	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99528000-99533000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:99528000-99535600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:99532000-99535600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:99532200-99533400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:99532200-99533400	Enhancers	K562	blood
6	chr7:99532400-99533000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr7:99532400-99533400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr7:99532400-99533400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:99532400-99548000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:99532600-99533200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr7:99532600-99533200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:99532600-99533400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr7:99532600-99533400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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