Variant report

Variant	rs61628776
Chromosome Location	chr9:95515900-95515901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95513914..95517972-chr9:95522627..95527202,5	K562	blood:
2	chr9:95504668..95516688-chr9:95523327..95528935,18	MCF-7	breast:
3	chr9:95515028..95516635-chr9:95519792..95522199,2	K562	blood:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1040977	0.80[EUR][1000 genomes]
rs10992447	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12686771	0.84[EUR][1000 genomes]
rs72756476	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61628776	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95502400-95516400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:95503400-95518000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95503600-95517800	Weak transcription	Fetal Intestine Large	intestine
4	chr9:95503800-95523800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:95508000-95517800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:95508200-95517800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:95508200-95517800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:95508400-95516400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:95509600-95517800	Weak transcription	Thymus	Thymus
10	chr9:95509800-95522000	Weak transcription	Liver	Liver
11	chr9:95511000-95516400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:95511000-95518000	Weak transcription	Hela-S3	cervix
13	chr9:95511800-95518000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:95511800-95518000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:95512000-95516600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:95512000-95517800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:95512000-95523400	Weak transcription	Aorta	Aorta
18	chr9:95512000-95525000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr9:95512200-95518000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:95512200-95521800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:95512400-95516400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:95512400-95517800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:95512400-95517800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:95512400-95518000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:95512400-95518000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:95512400-95518000	Weak transcription	Gastric	stomach
27	chr9:95512400-95521600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr9:95512400-95521600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:95512400-95522200	Weak transcription	NHDF-Ad	bronchial
30	chr9:95512400-95525200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:95512600-95516400	Weak transcription	Fetal Stomach	stomach
32	chr9:95512600-95518000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:95512600-95518000	Weak transcription	Fetal Lung	lung
34	chr9:95512600-95521600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:95512600-95521800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr9:95512600-95525400	Weak transcription	A549	lung
37	chr9:95512800-95518000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:95512800-95518200	Weak transcription	Brain Angular Gyrus	brain
39	chr9:95512800-95522200	Weak transcription	HSMM	muscle
40	chr9:95513000-95516400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:95513000-95518200	Weak transcription	Brain Substantia Nigra	brain
42	chr9:95513000-95519200	Weak transcription	Brain Hippocampus Middle	brain
43	chr9:95513000-95519200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr9:95513000-95520000	Weak transcription	Brain Anterior Caudate	brain
45	chr9:95513000-95521800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:95513000-95522200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr9:95513000-95522400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:95513000-95522600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:95513600-95521600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:95513600-95521600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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