Variant report

Variant	rs12686771
Chromosome Location	chr9:95472584-95472585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95467325..95471055-chr9:95471061..95474660,4	K562	blood:
2	chr9:95426803..95428983-chr9:95470405..95473212,2	K562	blood:
3	chr9:95471128..95473900-chr9:95482099..95486004,3	K562	blood:
4	chr9:95458695..95460331-chr9:95470006..95472763,2	MCF-7	breast:
5	chr9:95428577..95430199-chr9:95472529..95474207,2	MCF-7	breast:
6	chr9:95471876..95472624-chr9:95552927..95553706,2	K562	blood:
7	chr9:95431133..95434145-chr9:95472256..95474850,3	MCF-7	breast:
8	chr9:95471660..95473559-chr9:95474095..95476677,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1040977	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10491806	0.83[CEU][hapmap];0.85[TSI][hapmap]
rs10820998	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10821001	0.82[EUR][1000 genomes]
rs10821003	0.82[EUR][1000 genomes]
rs10821004	0.84[EUR][1000 genomes]
rs10821005	0.84[EUR][1000 genomes]
rs10821011	0.83[EUR][1000 genomes]
rs10821014	0.84[EUR][1000 genomes]
rs10992367	0.89[TSI][hapmap]
rs10992380	0.89[TSI][hapmap]
rs10992384	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10992390	0.84[CEU][hapmap]
rs10992392	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10992396	0.81[EUR][1000 genomes]
rs10992406	0.91[CEU][hapmap]
rs10992407	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10992408	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10992409	0.81[EUR][1000 genomes]
rs10992412	0.81[EUR][1000 genomes]
rs10992414	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10992416	0.81[EUR][1000 genomes]
rs10992417	0.81[EUR][1000 genomes]
rs10992420	0.82[EUR][1000 genomes]
rs10992422	0.84[EUR][1000 genomes]
rs10992423	0.82[EUR][1000 genomes]
rs10992437	0.82[EUR][1000 genomes]
rs10992447	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992448	1.00[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs10992453	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10992460	1.00[CEU][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs10992461	1.00[CEU][hapmap];0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs11533010	0.84[EUR][1000 genomes]
rs12236754	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12238691	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12684587	0.82[EUR][1000 genomes]
rs12685358	0.84[EUR][1000 genomes]
rs1323523	0.84[CEU][hapmap]
rs1326775	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs1575460	0.84[CEU][hapmap]
rs16908555	0.92[CEU][hapmap]
rs16908560	0.91[CEU][hapmap]
rs1853428	0.92[CEU][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs1853468	0.84[CEU][hapmap]
rs1974004	0.92[CEU][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs2131919	0.86[TSI][hapmap]
rs2146848	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs2148537	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs2181584	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2277169	0.86[EUR][1000 genomes]
rs2398780	0.82[CEU][hapmap]
rs3739605	1.00[CEU][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs56311406	0.82[EUR][1000 genomes]
rs57737182	0.82[EUR][1000 genomes]
rs58952648	0.84[EUR][1000 genomes]
rs60498616	0.84[EUR][1000 genomes]
rs61628776	0.84[EUR][1000 genomes]
rs7031163	1.00[CEU][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs72756476	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs753804	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7850075	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs7856147	0.84[CEU][hapmap]
rs7857105	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs7857502	0.84[CEU][hapmap]
rs7860628	0.82[EUR][1000 genomes]
rs7863741	0.81[EUR][1000 genomes]
rs7869603	0.84[EUR][1000 genomes]
rs7871537	0.84[CEU][hapmap]
rs7875050	0.90[CEU][hapmap]
rs912261	0.92[CEU][hapmap]
rs912264	0.84[CEU][hapmap]
rs971984	0.84[CEU][hapmap];0.93[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12686771	FBP1	cis	cerebellum	SCAN
rs12686771	OMD	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95460800-95473000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:95464600-95473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr9:95464800-95474600	Weak transcription	K562	blood
4	chr9:95464800-95477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:95465200-95474200	Weak transcription	Hela-S3	cervix
6	chr9:95465600-95473400	Weak transcription	NHDF-Ad	bronchial
7	chr9:95466800-95472800	Enhancers	HMEC	breast
8	chr9:95467600-95472800	Weak transcription	Right Ventricle	heart
9	chr9:95469000-95472600	Weak transcription	Ovary	ovary
10	chr9:95469000-95473000	Weak transcription	Brain Substantia Nigra	brain
11	chr9:95469000-95473400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:95469000-95473400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:95469000-95477200	Weak transcription	Stomach Mucosa	stomach
14	chr9:95469200-95473200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:95469200-95473200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:95469200-95475600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr9:95469200-95477400	Weak transcription	Right Atrium	heart
18	chr9:95469200-95480400	Weak transcription	Psoas Muscle	Psoas
19	chr9:95469400-95482000	Weak transcription	Fetal Brain Male	brain
20	chr9:95470000-95472800	Weak transcription	Brain Angular Gyrus	brain
21	chr9:95470000-95473000	Weak transcription	NHLF	lung
22	chr9:95470000-95473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:95470200-95472800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:95470200-95476000	Weak transcription	NH-A	brain
25	chr9:95470400-95473000	Weak transcription	HepG2	liver
26	chr9:95470400-95474800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr9:95470600-95473000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:95470600-95473000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr9:95470600-95473000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:95470600-95476200	Weak transcription	Fetal Kidney	kidney
31	chr9:95470600-95481400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:95470800-95472600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:95470800-95472600	Weak transcription	Fetal Lung	lung
34	chr9:95470800-95474200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr9:95470800-95474200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:95470800-95474800	Strong transcription	HSMM	muscle
37	chr9:95470800-95484800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:95471000-95473000	Strong transcription	HSMMtube	muscle
39	chr9:95471000-95473400	Strong transcription	Primary T cells from cord blood	blood
40	chr9:95471000-95473400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr9:95471000-95473600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:95471000-95473600	Genic enhancers	NHEK	skin
43	chr9:95471000-95485400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr9:95471000-95485600	Strong transcription	Fetal Thymus	thymus
45	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
46	chr9:95471200-95473400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:95471200-95473600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr9:95471200-95473600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:95471200-95473800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:95471200-95474200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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