Variant report

Variant	rs58952648
Chromosome Location	chr9:95456432-95456433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95432489..95434505-chr9:95455568..95458165,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CENPP-7	chr9:95452063-95458422	NONHSAT133202

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs1010823	0.82[ASN][1000 genomes]
rs1040977	0.80[EUR][1000 genomes]
rs10491806	0.83[AMR][1000 genomes]
rs10820998	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821001	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821002	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10821003	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821007	0.83[ASN][1000 genomes]
rs10821009	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10821010	0.82[ASN][1000 genomes]
rs10821011	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821012	0.82[ASN][1000 genomes]
rs10821014	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821015	0.82[ASN][1000 genomes]
rs10821016	0.82[ASN][1000 genomes]
rs10992367	0.84[AMR][1000 genomes]
rs10992380	0.88[AMR][1000 genomes]
rs10992384	0.86[AMR][1000 genomes]
rs10992390	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992392	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992394	0.81[ASN][1000 genomes]
rs10992396	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992404	0.87[ASN][1000 genomes]
rs10992406	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10992407	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992408	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992409	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992412	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992413	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10992414	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992418	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10992419	0.85[ASN][1000 genomes]
rs10992420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992423	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992426	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10992427	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992430	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10992431	0.83[ASN][1000 genomes]
rs10992432	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10992433	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10992434	0.83[ASN][1000 genomes]
rs10992436	0.82[ASN][1000 genomes]
rs10992437	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992438	0.82[ASN][1000 genomes]
rs10992441	0.81[ASN][1000 genomes]
rs10992442	0.82[ASN][1000 genomes]
rs10992443	0.82[ASN][1000 genomes]
rs10992444	0.82[ASN][1000 genomes]
rs10992445	0.82[ASN][1000 genomes]
rs10992447	0.84[EUR][1000 genomes]
rs10992448	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992451	0.82[ASN][1000 genomes]
rs10992453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992456	0.82[ASN][1000 genomes]
rs10992460	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992461	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992462	0.82[ASN][1000 genomes]
rs10992474	0.87[EUR][1000 genomes]
rs10992476	0.88[EUR][1000 genomes]
rs1125063	0.82[ASN][1000 genomes]
rs1125064	0.82[ASN][1000 genomes]
rs11533010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11535540	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12057034	0.88[EUR][1000 genomes]
rs12236013	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12236393	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12236516	0.82[ASN][1000 genomes]
rs12236747	0.82[ASN][1000 genomes]
rs12236754	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12236788	0.94[ASN][1000 genomes]
rs12237216	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12238691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12683944	0.81[ASN][1000 genomes]
rs12684076	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12684587	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12685080	0.80[AMR][1000 genomes]
rs12685256	0.85[ASN][1000 genomes]
rs12685257	0.82[ASN][1000 genomes]
rs12685358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685780	0.82[ASN][1000 genomes]
rs12685791	0.82[ASN][1000 genomes]
rs12686771	0.84[EUR][1000 genomes]
rs12686780	0.86[AMR][1000 genomes]
rs12686781	0.87[AMR][1000 genomes]
rs1323523	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1326775	0.87[AMR][1000 genomes]
rs1407944	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1575460	0.87[AMR][1000 genomes]
rs16908555	0.88[EUR][1000 genomes]
rs16908560	0.88[EUR][1000 genomes]
rs17366488	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1853429	0.88[EUR][1000 genomes]
rs1853468	0.92[AMR][1000 genomes]
rs2038685	0.90[AMR][1000 genomes]
rs2088054	0.82[AMR][1000 genomes]
rs2131919	0.84[AMR][1000 genomes]
rs2148537	0.87[AMR][1000 genomes]
rs2172716	0.84[AMR][1000 genomes]
rs2181584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181586	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2277164	0.85[ASN][1000 genomes]
rs2296080	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2398780	0.88[EUR][1000 genomes]
rs3203916	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3739605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4141966	0.88[EUR][1000 genomes]
rs4545157	0.82[ASN][1000 genomes]
rs556	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56111209	0.82[ASN][1000 genomes]
rs56203846	0.85[ASN][1000 genomes]
rs56311406	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56339669	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57421019	0.82[ASN][1000 genomes]
rs57720404	0.82[ASN][1000 genomes]
rs57737182	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60173654	0.82[ASN][1000 genomes]
rs60457563	0.82[ASN][1000 genomes]
rs60498616	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66493272	0.82[ASN][1000 genomes]
rs67601697	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68022962	0.82[ASN][1000 genomes]
rs68046436	0.82[ASN][1000 genomes]
rs7031163	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7037961	0.85[ASN][1000 genomes]
rs753802	0.82[ASN][1000 genomes]
rs753803	0.82[ASN][1000 genomes]
rs753804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs754600	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7850075	0.90[EUR][1000 genomes]
rs7850871	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7851947	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7853617	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7855203	0.85[EUR][1000 genomes]
rs7856147	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7857105	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7857502	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7859967	0.84[EUR][1000 genomes]
rs7860628	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7862106	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7863741	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7869529	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7869603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7875050	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7875227	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs8181065	0.82[ASN][1000 genomes]
rs878610	0.82[ASN][1000 genomes]
rs912259	0.82[ASN][1000 genomes]
rs912261	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs912264	0.92[AMR][1000 genomes]
rs971984	0.92[AMR][1000 genomes]
rs976320	0.82[ASN][1000 genomes]
rs976321	0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58952648	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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