Variant report

Variant	rs12685080
Chromosome Location	chr9:95447472-95447473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95438471..95440745-chr9:95446928..95449435,2	K562	blood:
2	chr9:95446803..95449319-chr9:95465675..95467741,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213669	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1010823	0.89[ASN][1000 genomes]
rs10820997	0.86[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10820998	0.81[CHB][hapmap]
rs10821000	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10821001	0.80[AMR][1000 genomes]
rs10821002	0.93[ASN][1000 genomes]
rs10821003	0.80[AMR][1000 genomes]
rs10821004	0.80[AMR][1000 genomes]
rs10821005	0.80[AMR][1000 genomes]
rs10821007	0.91[ASN][1000 genomes]
rs10821009	0.93[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10821010	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10821012	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10821014	0.80[AMR][1000 genomes]
rs10821015	0.89[ASN][1000 genomes]
rs10821016	0.89[ASN][1000 genomes]
rs10992382	0.81[YRI][hapmap]
rs10992384	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs10992390	0.82[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10992392	0.81[CHB][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes]
rs10992396	0.82[ASN][1000 genomes]
rs10992402	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10992403	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10992404	0.83[ASN][1000 genomes]
rs10992406	0.83[CHB][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs10992407	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10992408	0.83[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10992409	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10992412	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10992413	0.94[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs10992414	0.80[AMR][1000 genomes]
rs10992416	0.80[AMR][1000 genomes]
rs10992417	0.80[AMR][1000 genomes]
rs10992418	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992419	0.93[ASN][1000 genomes]
rs10992420	0.80[AMR][1000 genomes]
rs10992422	0.80[AMR][1000 genomes]
rs10992423	0.80[AMR][1000 genomes]
rs10992427	0.93[ASN][1000 genomes]
rs10992430	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10992431	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10992432	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10992434	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10992436	0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992437	0.80[AMR][1000 genomes]
rs10992438	0.89[ASN][1000 genomes]
rs10992441	0.89[ASN][1000 genomes]
rs10992442	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992443	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992444	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992445	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992451	0.94[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10992456	0.89[ASN][1000 genomes]
rs10992462	0.89[ASN][1000 genomes]
rs10992469	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1117670	0.81[YRI][hapmap]
rs1125063	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1125064	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11533010	0.80[AMR][1000 genomes]
rs11535540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12236393	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12236516	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12236747	0.89[ASN][1000 genomes]
rs12236754	0.83[JPT][hapmap]
rs12237216	0.81[ASN][1000 genomes]
rs12238691	0.80[AMR][1000 genomes]
rs12683944	0.89[ASN][1000 genomes]
rs12685256	0.93[ASN][1000 genomes]
rs12685257	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12685358	0.80[AMR][1000 genomes]
rs12685780	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12685791	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12686058	0.88[ASN][1000 genomes]
rs12686780	0.81[AFR][1000 genomes]
rs12686781	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs1326775	0.88[YRI][hapmap]
rs1552908	0.86[CHB][hapmap]
rs1555574	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1575460	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1810696	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1874128	0.86[CHB][hapmap];0.94[YRI][hapmap]
rs1980705	0.86[CHB][hapmap];0.89[YRI][hapmap]
rs2146719	0.84[EUR][1000 genomes]
rs2148537	0.88[YRI][hapmap]
rs2181521	0.85[EUR][1000 genomes]
rs2181584	0.80[AMR][1000 genomes]
rs2181586	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2274413	0.82[CEU][hapmap];0.87[CHB][hapmap];0.90[YRI][hapmap]
rs2277164	0.85[ASN][1000 genomes]
rs2277166	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2281888	0.86[CHB][hapmap];0.89[YRI][hapmap]
rs2296080	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs3203916	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs3739605	0.80[AMR][1000 genomes]
rs41266683	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4545157	0.89[ASN][1000 genomes]
rs556	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs56111209	0.89[ASN][1000 genomes]
rs56203846	0.93[ASN][1000 genomes]
rs56339669	0.91[ASN][1000 genomes]
rs57421019	0.89[ASN][1000 genomes]
rs57720404	0.89[ASN][1000 genomes]
rs58952648	0.80[AMR][1000 genomes]
rs60173654	0.89[ASN][1000 genomes]
rs60457563	0.89[ASN][1000 genomes]
rs60498616	0.80[AMR][1000 genomes]
rs6479426	0.81[YRI][hapmap]
rs66493272	0.92[ASN][1000 genomes]
rs68022962	0.89[ASN][1000 genomes]
rs68046436	0.89[ASN][1000 genomes]
rs7037961	0.93[ASN][1000 genomes]
rs753802	0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs753803	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs753804	0.80[AMR][1000 genomes]
rs754600	0.80[AMR][1000 genomes]
rs7853617	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7856147	0.82[CHB][hapmap]
rs7857105	0.81[CHB][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7857502	0.83[CHB][hapmap]
rs7862106	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7863882	0.81[YRI][hapmap]
rs7863890	0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7864889	0.93[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7869529	0.93[ASN][1000 genomes]
rs7869603	0.80[AMR][1000 genomes]
rs7871537	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7875050	0.83[CHB][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes]
rs7875225	0.86[JPT][hapmap]
rs7875227	0.90[ASN][1000 genomes]
rs8181065	0.94[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs878610	0.89[ASN][1000 genomes]
rs879812	0.93[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs912259	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs912261	0.81[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs912264	0.88[CHB][hapmap]
rs976320	0.84[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs976321	0.89[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95443200-95450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95447000-95447600	Enhancers	Primary B cells from peripheral blood	blood
3	chr9:95447200-95448000	Enhancers	GM12878-XiMat	blood

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