Variant report

Variant	rs2181521
Chromosome Location	chr9:95558906-95558907
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10117377	0.86[ASN][1000 genomes]
rs10992418	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992469	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992472	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11535540	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12685080	0.85[EUR][1000 genomes]
rs1555574	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1810696	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146719	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850075	0.83[AMR][1000 genomes]
rs7855203	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7862106	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7868651	0.89[ASN][1000 genomes]
rs7871537	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7875225	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2181521	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95556600-95559000	Enhancers	Fetal Brain Male	brain
2	chr9:95558400-95559000	Bivalent Enhancer	GM12878-XiMat	blood
3	chr9:95558600-95559000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:95558600-95569600	Weak transcription	Right Atrium	heart
5	chr9:95558800-95559000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:95558800-95559000	Bivalent Enhancer	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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