Variant report

Variant	rs7855203
Chromosome Location	chr9:95557334-95557335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10820998	0.92[MEX][hapmap];0.82[TSI][hapmap]
rs10821001	0.84[EUR][1000 genomes]
rs10821003	0.84[EUR][1000 genomes]
rs10821004	0.85[EUR][1000 genomes]
rs10821005	0.85[EUR][1000 genomes]
rs10821011	0.84[EUR][1000 genomes]
rs10821014	0.85[EUR][1000 genomes]
rs10821017	0.85[AMR][1000 genomes]
rs10992382	0.91[MEX][hapmap]
rs10992384	0.92[MEX][hapmap];0.82[TSI][hapmap]
rs10992392	0.92[MEX][hapmap];0.82[TSI][hapmap]
rs10992396	0.82[EUR][1000 genomes]
rs10992406	0.83[CEU][hapmap]
rs10992407	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992408	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992409	0.82[EUR][1000 genomes]
rs10992412	0.82[EUR][1000 genomes]
rs10992414	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10992416	0.83[EUR][1000 genomes]
rs10992417	0.83[EUR][1000 genomes]
rs10992420	0.84[EUR][1000 genomes]
rs10992422	0.85[EUR][1000 genomes]
rs10992423	0.84[EUR][1000 genomes]
rs10992437	0.84[EUR][1000 genomes]
rs10992447	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs10992448	0.92[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992453	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992460	0.92[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992461	0.92[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992469	0.80[MEX][hapmap]
rs10992474	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992476	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1117670	0.92[MEX][hapmap]
rs11533010	0.85[EUR][1000 genomes]
rs12057034	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12236754	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12238691	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs12684076	0.81[EUR][1000 genomes]
rs12684587	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12685358	0.85[EUR][1000 genomes]
rs12686771	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs1326775	0.92[MEX][hapmap];0.82[TSI][hapmap]
rs16908555	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16908560	1.00[CEU][hapmap];0.94[GIH][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1810696	0.81[LWK][hapmap];0.84[MEX][hapmap];0.85[AMR][1000 genomes]
rs1853428	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs1853429	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1853468	0.92[MEX][hapmap]
rs1974004	1.00[CEU][hapmap];0.92[TSI][hapmap]
rs2146719	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2148537	0.92[MEX][hapmap];0.82[TSI][hapmap]
rs2181521	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2181584	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2398780	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3739605	0.92[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs4141966	0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56311406	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57737182	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58952648	0.85[EUR][1000 genomes]
rs60498616	0.85[EUR][1000 genomes]
rs6479426	0.92[MEX][hapmap]
rs7031163	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs753804	0.85[EUR][1000 genomes]
rs7850075	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7857105	0.92[MEX][hapmap];0.82[TSI][hapmap]
rs7859967	0.86[EUR][1000 genomes]
rs7860628	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7863741	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7863882	0.92[MEX][hapmap]
rs7869603	0.85[EUR][1000 genomes]
rs7871537	0.84[CEU][hapmap]
rs912261	0.85[CEU][hapmap];0.92[MEX][hapmap]
rs971984	0.92[MEX][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7855203	OMD	cis	parietal	SCAN
rs7855203	ANKRD19	cis	cerebellum	SCAN
rs7855203	FBP1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95553600-95557400	Weak transcription	Liver	Liver
3	chr9:95556600-95559000	Enhancers	Fetal Brain Male	brain

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