Variant report

Variant	rs10992396
Chromosome Location	chr9:95437132-95437133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95432262..95434312-chr9:95435831..95437633,3	K562	blood:
2	chr9:95434757..95437409-chr9:95526040..95528904,2	MCF-7	breast:
3	chr9:95436301..95439240-chr9:95442495..95445475,2	K562	blood:
4	chr9:95435216..95437864-chr9:95474368..95476596,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10491806	0.84[AMR][1000 genomes]
rs10820998	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821000	0.83[ASN][1000 genomes]
rs10821001	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821003	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821004	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821005	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821011	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821014	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992367	0.85[AMR][1000 genomes]
rs10992380	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10992384	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992390	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992392	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992394	0.94[ASN][1000 genomes]
rs10992402	0.81[ASN][1000 genomes]
rs10992403	0.83[ASN][1000 genomes]
rs10992404	0.99[ASN][1000 genomes]
rs10992406	0.99[ASN][1000 genomes]
rs10992407	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992408	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992409	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992412	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992414	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992416	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992417	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992418	0.83[AMR][1000 genomes]
rs10992420	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992422	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992423	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992426	0.84[ASN][1000 genomes]
rs10992433	0.83[ASN][1000 genomes]
rs10992437	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992447	0.81[EUR][1000 genomes]
rs10992448	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992453	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992460	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992461	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992474	0.84[EUR][1000 genomes]
rs10992476	0.85[EUR][1000 genomes]
rs11533010	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11535540	0.83[AMR][1000 genomes]
rs12057034	0.85[EUR][1000 genomes]
rs12236013	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12236754	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12236788	0.84[ASN][1000 genomes]
rs12237216	0.97[ASN][1000 genomes]
rs12238691	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684076	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12684587	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12685080	0.82[ASN][1000 genomes]
rs12685358	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12686771	0.81[EUR][1000 genomes]
rs12686780	0.87[AMR][1000 genomes]
rs12686781	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1323523	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1326775	0.88[AMR][1000 genomes]
rs1407944	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1575460	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16908555	0.85[EUR][1000 genomes]
rs16908560	0.85[EUR][1000 genomes]
rs17366488	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1853429	0.85[EUR][1000 genomes]
rs1853468	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2038685	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2088054	0.83[AMR][1000 genomes]
rs2131919	0.85[AMR][1000 genomes]
rs2148537	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2172716	0.85[AMR][1000 genomes]
rs2181584	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2398780	0.85[EUR][1000 genomes]
rs3739605	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141966	0.85[EUR][1000 genomes]
rs56311406	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57737182	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58952648	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60498616	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67601697	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7031163	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs753804	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs754600	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7850075	0.87[EUR][1000 genomes]
rs7850871	0.84[ASN][1000 genomes]
rs7851947	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7853617	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7855203	0.82[EUR][1000 genomes]
rs7856147	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7857105	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7857502	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7859967	0.81[EUR][1000 genomes]
rs7860628	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7862106	0.83[AMR][1000 genomes]
rs7863741	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7869603	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7875050	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs912261	0.98[ASN][1000 genomes]
rs912264	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs971984	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95433400-95442800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95433800-95437400	Weak transcription	Stomach Mucosa	stomach
3	chr9:95433800-95441800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:95433800-95444000	Weak transcription	Fetal Brain Female	brain
5	chr9:95434000-95437200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:95434000-95439200	Weak transcription	Primary T cells from cord blood	blood
7	chr9:95434000-95439200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:95434000-95439200	Weak transcription	Fetal Thymus	thymus
9	chr9:95434000-95439400	Weak transcription	HepG2	liver
10	chr9:95434000-95439800	Weak transcription	Brain Germinal Matrix	brain
11	chr9:95434000-95441800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:95434000-95441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:95434000-95442400	Weak transcription	NHDF-Ad	bronchial
14	chr9:95434200-95438600	Weak transcription	K562	blood
15	chr9:95434200-95438800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:95434200-95439400	Weak transcription	Right Atrium	heart
17	chr9:95434200-95441800	Weak transcription	Esophagus	oesophagus
18	chr9:95434200-95441800	Weak transcription	NHEK	skin
19	chr9:95434200-95442800	Weak transcription	Placenta	Placenta
20	chr9:95434400-95439200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:95435600-95437200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:95436800-95439600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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