Variant report

Variant	rs2038685
Chromosome Location	chr9:95365182-95365183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95363885..95366186-chr9:95423514..95426294,2	MCF-7	breast:
2	chr9:95364179..95365756-chr9:95368617..95371594,2	K562	blood:
3	chr9:95267270..95270140-chr9:95362878..95365869,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10491806	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820997	0.80[AMR][1000 genomes]
rs10820998	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821001	0.90[AMR][1000 genomes]
rs10821003	0.90[AMR][1000 genomes]
rs10821004	0.90[AMR][1000 genomes]
rs10821005	0.90[AMR][1000 genomes]
rs10821011	0.89[AMR][1000 genomes]
rs10821014	0.90[AMR][1000 genomes]
rs10992367	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992380	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992382	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992384	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992390	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992392	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992396	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10992407	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10992408	0.87[AMR][1000 genomes]
rs10992409	0.87[AMR][1000 genomes]
rs10992412	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs10992414	0.90[AMR][1000 genomes]
rs10992416	0.90[AMR][1000 genomes]
rs10992417	0.90[AMR][1000 genomes]
rs10992420	0.90[AMR][1000 genomes]
rs10992422	0.90[AMR][1000 genomes]
rs10992423	0.90[AMR][1000 genomes]
rs10992437	0.90[AMR][1000 genomes]
rs10992448	0.86[AMR][1000 genomes]
rs10992453	0.84[AMR][1000 genomes]
rs10992460	0.81[AMR][1000 genomes]
rs10992461	0.81[AMR][1000 genomes]
rs1117670	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11533010	0.90[AMR][1000 genomes]
rs12236013	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12236754	0.86[AMR][1000 genomes]
rs12238691	0.90[AMR][1000 genomes]
rs12684587	0.84[AMR][1000 genomes]
rs12685358	0.90[AMR][1000 genomes]
rs12686780	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12686781	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1323523	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1326775	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1575460	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17366488	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1853468	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1874128	0.82[ASN][1000 genomes]
rs2038686	0.82[ASN][1000 genomes]
rs2088054	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2088055	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2131919	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2148537	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2172716	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2181584	0.90[AMR][1000 genomes]
rs3739605	0.90[AMR][1000 genomes]
rs56311406	0.81[AMR][1000 genomes]
rs57737182	0.81[AMR][1000 genomes]
rs58045868	0.80[ASN][1000 genomes]
rs58952648	0.90[AMR][1000 genomes]
rs60498616	0.90[AMR][1000 genomes]
rs6479426	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs67601697	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7031163	0.84[AMR][1000 genomes]
rs753804	0.90[AMR][1000 genomes]
rs754600	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7853617	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7856147	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7857105	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7857502	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7860628	0.81[AMR][1000 genomes]
rs7863882	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7869603	0.90[AMR][1000 genomes]
rs7875050	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs912264	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs971984	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95347600-95365800	Weak transcription	Thymus	Thymus
2	chr9:95355800-95367000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:95360200-95370200	Weak transcription	Fetal Heart	heart
4	chr9:95360400-95366000	Enhancers	Fetal Muscle Trunk	muscle
5	chr9:95360400-95366000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:95361600-95366000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:95362200-95365600	Weak transcription	Dnd41	blood
8	chr9:95362800-95373000	Weak transcription	HMEC	breast
9	chr9:95363000-95370200	Weak transcription	Right Atrium	heart
10	chr9:95363000-95371400	Weak transcription	Right Ventricle	heart
11	chr9:95363200-95371600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:95363400-95374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:95364000-95365200	Weak transcription	HepG2	liver
15	chr9:95364000-95366200	Weak transcription	NH-A	brain
16	chr9:95364000-95368600	Weak transcription	Osteobl	bone
17	chr9:95364000-95369400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:95364000-95370000	Weak transcription	Aorta	Aorta
19	chr9:95364000-95370400	Weak transcription	Ovary	ovary
20	chr9:95364000-95372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:95364200-95365400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:95364200-95365400	Weak transcription	Esophagus	oesophagus
23	chr9:95364200-95365600	Weak transcription	Pancreas	Pancrea
24	chr9:95364200-95365800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:95364400-95370200	Weak transcription	HSMMtube	muscle
26	chr9:95364400-95372800	Weak transcription	NHEK	skin
27	chr9:95364600-95368800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:95364800-95365800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:95364800-95370400	Weak transcription	Gastric	stomach

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