Variant report

Variant	rs10992392
Chromosome Location	chr9:95419667-95419668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95415511..95417120-chr9:95418823..95421192,2	MCF-7	breast:
2	chr9:95413843..95416363-chr9:95418388..95420080,2	MCF-7	breast:
3	chr9:95411739..95414427-chr9:95417430..95420333,2	MCF-7	breast:
4	chr9:95410486..95413070-chr9:95417847..95420267,2	K562	blood:
5	chr9:95416446..95420766-chr9:95422078..95429343,12	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10491806	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes]
rs10820997	0.83[ASW][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs10820998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821001	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821003	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821004	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821005	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821009	0.81[CHB][hapmap];0.84[MEX][hapmap]
rs10821011	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821012	0.84[MEX][hapmap]
rs10821014	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992367	0.91[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes]
rs10992380	0.91[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992382	1.00[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10992384	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992394	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992396	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992404	0.88[ASN][1000 genomes]
rs10992406	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10992407	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992408	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992409	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992414	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992416	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992417	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992422	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992423	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992434	0.84[MEX][hapmap]
rs10992437	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992444	0.84[MEX][hapmap]
rs10992445	0.84[MEX][hapmap]
rs10992447	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10992448	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992453	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992460	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs10992461	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs1117670	0.91[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs11533010	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12236013	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236754	0.82[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12237216	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12238691	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12684076	0.84[EUR][1000 genomes]
rs12684587	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685080	0.81[CHB][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes]
rs12685257	0.84[MEX][hapmap]
rs12685358	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12685780	0.84[MEX][hapmap]
rs12686771	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs12686780	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686781	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1323523	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326775	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1552908	0.84[MEX][hapmap]
rs1575460	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17366488	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853468	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1874128	0.83[ASW][hapmap];0.82[YRI][hapmap]
rs1980705	0.84[MEX][hapmap]
rs2038685	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2088054	0.84[AMR][1000 genomes]
rs2131919	0.91[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes]
rs2146848	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2148537	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2172716	0.86[AMR][1000 genomes]
rs2181584	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2277166	0.82[ASN][1000 genomes]
rs2277169	0.82[EUR][1000 genomes]
rs2281888	0.84[MEX][hapmap]
rs2296080	0.84[MEX][hapmap]
rs3203916	0.84[MEX][hapmap]
rs3739605	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs556	0.84[MEX][hapmap]
rs56311406	0.86[EUR][1000 genomes]
rs57737182	0.86[EUR][1000 genomes]
rs58952648	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60498616	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479426	0.91[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs67601697	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7031163	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs753804	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs754600	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7850075	0.91[MEX][hapmap];0.82[TSI][hapmap]
rs7853617	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7857105	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7857502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7860628	0.86[EUR][1000 genomes]
rs7863741	0.87[EUR][1000 genomes]
rs7863882	1.00[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7863890	0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs7864889	0.82[JPT][hapmap]
rs7869603	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7875050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs879812	0.82[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs912261	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs912264	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs971984	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10992392	IARS	cis	lymphoblastoid	seeQTL
rs10992392	CENPP	cis	multi-tissue	Pritchard
rs10992392	OMD	cis	parietal	SCAN
rs10992392	FBP1	cis	cerebellum	SCAN
rs10992392	ANKRD19	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
3	chr9:95384800-95421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:95391800-95421000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:95392400-95420800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:95393200-95421200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:95393200-95421600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr9:95393600-95421000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr9:95393800-95421000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:95394000-95420800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:95396000-95420000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:95396800-95422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:95398200-95420800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:95401200-95421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:95401200-95422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:95408000-95420800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:95408400-95421200	Strong transcription	Brain Germinal Matrix	brain
18	chr9:95408600-95420800	Strong transcription	Fetal Brain Female	brain
19	chr9:95408800-95421000	Strong transcription	Thymus	Thymus
20	chr9:95408800-95426800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:95409600-95421200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr9:95409800-95420200	Strong transcription	Lung	lung
23	chr9:95409800-95431000	Weak transcription	Fetal Kidney	kidney
24	chr9:95410200-95420800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:95410400-95420800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:95410400-95420800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:95410800-95427000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:95411000-95431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:95411400-95420200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:95411400-95421800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:95411600-95420800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:95411800-95419800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:95411800-95426600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:95411800-95427400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr9:95412000-95422000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:95412000-95422000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:95412000-95423800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:95412000-95426600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr9:95412000-95428400	Weak transcription	K562	blood
40	chr9:95412000-95431000	Weak transcription	Fetal Brain Male	brain
41	chr9:95412400-95431200	Weak transcription	Small Intestine	intestine
42	chr9:95413400-95427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:95414000-95421200	Strong transcription	Fetal Stomach	stomach
44	chr9:95415000-95420800	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:95415200-95420800	Strong transcription	Brain Hippocampus Middle	brain
46	chr9:95415200-95421000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:95415200-95422000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:95415400-95420000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:95415400-95421200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:95415400-95421200	Strong transcription	Fetal Thymus	thymus

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