Variant report

Variant	rs17366488
Chromosome Location	chr9:95425200-95425201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95416446..95420766-chr9:95422078..95429343,12	MCF-7	breast:
2	chr9:95423683..95425377-chr9:95528683..95530646,2	K562	blood:
3	chr9:95363885..95366186-chr9:95423514..95426294,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10491806	0.89[AMR][1000 genomes]
rs10820997	0.83[AMR][1000 genomes]
rs10820998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821001	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821003	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821004	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821005	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821011	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821014	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992367	0.90[AMR][1000 genomes]
rs10992380	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992382	0.81[AMR][1000 genomes]
rs10992384	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992390	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992392	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992394	0.95[ASN][1000 genomes]
rs10992396	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992404	0.90[ASN][1000 genomes]
rs10992406	0.90[ASN][1000 genomes]
rs10992407	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992408	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992409	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992412	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992414	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992416	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992417	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992418	0.82[AMR][1000 genomes]
rs10992420	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992422	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992423	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992437	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992448	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992453	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992460	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992461	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1117670	0.81[AMR][1000 genomes]
rs11533010	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11535540	0.82[AMR][1000 genomes]
rs12236013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236754	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12237216	0.88[ASN][1000 genomes]
rs12238691	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12684076	0.84[EUR][1000 genomes]
rs12684587	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685358	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12686780	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686781	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1323523	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1326775	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1575460	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1853468	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2038685	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2088054	0.88[AMR][1000 genomes]
rs2088055	0.84[AMR][1000 genomes]
rs2131919	0.90[AMR][1000 genomes]
rs2146848	0.82[EUR][1000 genomes]
rs2148537	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2172716	0.90[AMR][1000 genomes]
rs2181584	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2277166	0.81[ASN][1000 genomes]
rs2277169	0.82[EUR][1000 genomes]
rs3739605	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56311406	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57737182	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58952648	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60498616	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479426	0.81[AMR][1000 genomes]
rs67601697	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7031163	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs753804	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs754600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853617	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856147	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857105	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7860628	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7862106	0.82[AMR][1000 genomes]
rs7863741	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7863882	0.81[AMR][1000 genomes]
rs7863890	0.82[ASN][1000 genomes]
rs7869603	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7875050	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs879812	0.82[ASN][1000 genomes]
rs912261	0.89[ASN][1000 genomes]
rs912264	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs971984	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17366488	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
2	chr9:95408800-95426800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:95409800-95431000	Weak transcription	Fetal Kidney	kidney
4	chr9:95410800-95427000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:95411000-95431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:95411800-95426600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:95411800-95427400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:95412000-95426600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr9:95412000-95428400	Weak transcription	K562	blood
10	chr9:95412000-95431000	Weak transcription	Fetal Brain Male	brain
11	chr9:95412400-95431200	Weak transcription	Small Intestine	intestine
12	chr9:95413400-95427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:95416800-95426600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:95417800-95426600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:95417800-95426600	Weak transcription	Right Atrium	heart
16	chr9:95417800-95431000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr9:95418000-95428800	Weak transcription	Fetal Lung	lung
18	chr9:95418000-95431000	Weak transcription	Psoas Muscle	Psoas
19	chr9:95418200-95428600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:95418600-95431000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:95418800-95426800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:95420000-95426000	Weak transcription	HepG2	liver
23	chr9:95420600-95425200	Weak transcription	Liver	Liver
24	chr9:95420800-95425400	Weak transcription	Primary T cells from cord blood	blood
25	chr9:95420800-95426400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr9:95420800-95426400	Weak transcription	NHLF	lung
27	chr9:95420800-95426600	Weak transcription	NHDF-Ad	bronchial
28	chr9:95420800-95427000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:95420800-95428200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:95420800-95428200	Weak transcription	Fetal Intestine Large	intestine
31	chr9:95420800-95428200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:95420800-95428400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:95420800-95428400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:95420800-95429000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:95420800-95430800	Weak transcription	HSMMtube	muscle
36	chr9:95420800-95431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:95420800-95431000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:95421000-95425200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:95421000-95425200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:95421000-95425400	Weak transcription	Placenta	Placenta
41	chr9:95421000-95426000	Weak transcription	Thymus	Thymus
42	chr9:95421000-95426600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:95421000-95428200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr9:95421000-95428200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr9:95421000-95428400	Weak transcription	Ovary	ovary
46	chr9:95421200-95425400	Weak transcription	Brain Germinal Matrix	brain
47	chr9:95421200-95425400	Weak transcription	GM12878-XiMat	blood
48	chr9:95421200-95426600	Weak transcription	Fetal Thymus	thymus
49	chr9:95421200-95428200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr9:95421200-95428400	Weak transcription	Aorta	Aorta

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