Variant report

Variant	rs7857105
Chromosome Location	chr9:95427757-95427758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95416446..95420766-chr9:95422078..95429343,12	MCF-7	breast:
2	chr9:95404607..95407268-chr9:95427098..95429531,2	MCF-7	breast:
3	chr9:95408645..95411080-chr9:95427015..95428755,2	MCF-7	breast:
4	chr9:95426803..95428983-chr9:95470405..95473212,2	K562	blood:
5	chr9:95381007..95381722-chr9:95427722..95428271,2	MCF-7	breast:

Extended variants
information (count: 101 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10491806	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes]
rs10820997	0.83[ASW][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs10820998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821001	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821003	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821004	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821005	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821009	0.81[CHB][hapmap];0.84[MEX][hapmap]
rs10821011	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821012	0.84[MEX][hapmap]
rs10821014	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992367	0.91[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes]
rs10992380	0.91[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992382	1.00[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10992384	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992392	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992394	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10992396	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992404	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10992406	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10992407	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992408	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992409	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992414	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992416	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992417	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992422	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992423	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992434	0.84[MEX][hapmap]
rs10992437	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992444	0.84[MEX][hapmap]
rs10992445	0.84[MEX][hapmap]
rs10992447	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10992448	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992453	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992460	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs10992461	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs1117670	0.91[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs11533010	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12236013	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236754	0.82[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12237216	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12238691	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12684076	0.84[EUR][1000 genomes]
rs12684587	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685080	0.81[CHB][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12685257	0.84[MEX][hapmap]
rs12685358	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12685780	0.84[MEX][hapmap]
rs12686771	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs12686780	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686781	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1323523	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1326775	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1552908	0.84[MEX][hapmap]
rs1575460	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17366488	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853468	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1874128	0.83[ASW][hapmap];0.82[YRI][hapmap]
rs1980705	0.84[MEX][hapmap]
rs2038685	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2088054	0.84[AMR][1000 genomes]
rs2131919	0.91[CEU][hapmap];0.88[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes]
rs2146848	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2148537	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2172716	0.86[AMR][1000 genomes]
rs2181584	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2277166	0.81[ASN][1000 genomes]
rs2277169	0.82[EUR][1000 genomes]
rs2281888	0.84[MEX][hapmap]
rs2296080	0.84[MEX][hapmap]
rs3203916	0.84[MEX][hapmap]
rs3739605	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs556	0.84[MEX][hapmap]
rs56311406	0.86[EUR][1000 genomes]
rs57737182	0.86[EUR][1000 genomes]
rs58952648	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60498616	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479426	0.91[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs67601697	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7031163	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs753804	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs754600	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7850075	0.91[MEX][hapmap];0.82[TSI][hapmap]
rs7853617	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7860628	0.86[EUR][1000 genomes]
rs7863741	0.87[EUR][1000 genomes]
rs7863882	1.00[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7863890	0.82[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs7864889	0.82[JPT][hapmap]
rs7869603	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7875050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs879812	0.82[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs912261	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs912264	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs971984	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7857105	OMD	cis	parietal	SCAN
rs7857105	IARS	cis	lymphoblastoid	seeQTL
rs7857105	ANKRD19	cis	cerebellum	SCAN
rs7857105	CENPP	cis	multi-tissue	Pritchard
rs7857105	FBP1	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
2	chr9:95409800-95431000	Weak transcription	Fetal Kidney	kidney
3	chr9:95411000-95431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:95412000-95428400	Weak transcription	K562	blood
5	chr9:95412000-95431000	Weak transcription	Fetal Brain Male	brain
6	chr9:95412400-95431200	Weak transcription	Small Intestine	intestine
7	chr9:95417800-95431000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:95418000-95428800	Weak transcription	Fetal Lung	lung
9	chr9:95418000-95431000	Weak transcription	Psoas Muscle	Psoas
10	chr9:95418200-95428600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:95418600-95431000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:95420800-95428200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:95420800-95428200	Weak transcription	Fetal Intestine Large	intestine
14	chr9:95420800-95428200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:95420800-95428400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:95420800-95428400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:95420800-95429000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:95420800-95430800	Weak transcription	HSMMtube	muscle
19	chr9:95420800-95431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:95420800-95431000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:95421000-95428200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:95421000-95428200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:95421000-95428400	Weak transcription	Ovary	ovary
24	chr9:95421200-95428200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:95421200-95428400	Weak transcription	Aorta	Aorta
26	chr9:95421200-95430800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:95421200-95430800	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:95421200-95431000	Weak transcription	Colonic Mucosa	Colon
29	chr9:95421400-95428200	Weak transcription	Dnd41	blood
30	chr9:95421400-95428400	Weak transcription	A549	lung
31	chr9:95422200-95429800	Strong transcription	Fetal Intestine Small	intestine
32	chr9:95422400-95431200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:95422800-95428800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:95422800-95430800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:95422800-95431000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:95422800-95431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:95423000-95428800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:95423400-95429800	Strong transcription	Fetal Stomach	stomach
39	chr9:95424000-95428200	Weak transcription	Osteobl	bone
40	chr9:95424000-95429800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr9:95424200-95430600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:95424400-95428400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:95425200-95430000	Strong transcription	Fetal Muscle Leg	muscle
44	chr9:95425400-95428600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:95425600-95428600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr9:95426000-95428600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:95426200-95428000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr9:95426200-95431000	Weak transcription	Primary B cells from cord blood	blood
49	chr9:95426400-95427800	Enhancers	NH-A	brain
50	chr9:95426400-95428400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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