Variant report

Variant	rs7856147
Chromosome Location	chr9:95410897-95410898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95406971..95409347-chr9:95410365..95412966,3	K562	blood:
2	chr9:95408645..95411080-chr9:95427015..95428755,2	MCF-7	breast:
3	chr9:95410486..95413070-chr9:95417847..95420267,2	K562	blood:
4	chr9:95410388..95412168-chr9:95415028..95416964,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10491806	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs10820997	0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10820998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821001	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821003	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10821004	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821005	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821009	0.81[CHB][hapmap]
rs10821011	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821014	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992367	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10992380	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992382	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs10992384	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992394	0.92[ASN][1000 genomes]
rs10992396	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992404	0.87[ASN][1000 genomes]
rs10992406	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10992407	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992408	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992409	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992412	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992414	0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992416	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992417	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992420	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992422	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992423	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992437	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992447	0.84[CEU][hapmap]
rs10992448	0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992453	0.86[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992460	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992461	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1117670	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs11533010	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12236013	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12236754	0.84[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237216	0.85[ASN][1000 genomes]
rs12238691	0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12684076	0.82[EUR][1000 genomes]
rs12684587	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12685080	0.82[CHB][hapmap]
rs12685358	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12686771	0.84[CEU][hapmap]
rs12686780	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12686781	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1323523	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1326775	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1575460	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17366488	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1853468	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2038685	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2088054	0.86[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2131919	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs2146848	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2148537	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2172716	0.88[AMR][1000 genomes]
rs2181584	0.86[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2277169	0.83[EUR][1000 genomes]
rs230222	1.00[YRI][hapmap]
rs331380	1.00[YRI][hapmap]
rs3739605	0.84[CEU][hapmap];0.94[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41266683	0.82[ASN][1000 genomes]
rs4141966	0.81[CEU][hapmap]
rs56311406	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57737182	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58952648	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60498616	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6479426	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs67601697	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031163	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs753804	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs754600	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7853617	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7857105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7860628	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7863741	0.85[EUR][1000 genomes]
rs7863882	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs7863890	0.82[JPT][hapmap]
rs7864889	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7869603	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7875050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879812	0.82[JPT][hapmap]
rs912261	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs912264	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs971984	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7856147	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
3	chr9:95384800-95421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:95390200-95411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:95391800-95421000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:95392000-95414600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr9:95392000-95419600	Strong transcription	Primary T cells from cord blood	blood
8	chr9:95392400-95420800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:95393200-95412000	Strong transcription	Right Ventricle	heart
10	chr9:95393200-95421200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:95393200-95421600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:95393600-95421000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr9:95393800-95412800	Strong transcription	Placenta	Placenta
14	chr9:95393800-95413400	Strong transcription	Dnd41	blood
15	chr9:95393800-95414000	Strong transcription	Fetal Thymus	thymus
16	chr9:95393800-95414000	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr9:95393800-95414400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr9:95393800-95419200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:95393800-95421000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:95394000-95420800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:95394200-95418800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:95394200-95419200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:95395000-95416600	Strong transcription	GM12878-XiMat	blood
24	chr9:95396000-95420000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:95396800-95422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:95397200-95412800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:95397200-95417800	Strong transcription	Liver	Liver
28	chr9:95397400-95412000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:95397400-95412000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:95397400-95417000	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:95397600-95412000	Strong transcription	Adipose Nuclei	Adipose
32	chr9:95397600-95412800	Weak transcription	Fetal Heart	heart
33	chr9:95398200-95420800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:95399000-95414000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:95400400-95415600	Strong transcription	HUVEC	blood vessel
36	chr9:95400600-95414000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr9:95400600-95417600	Weak transcription	Psoas Muscle	Psoas
38	chr9:95401200-95421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:95401200-95422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:95401400-95417200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:95402800-95412800	Strong transcription	Osteobl	bone
42	chr9:95403000-95412200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:95403400-95412000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr9:95403600-95412000	Strong transcription	K562	blood
45	chr9:95403800-95411200	Weak transcription	Small Intestine	intestine
46	chr9:95404200-95411800	Strong transcription	HSMM	muscle
47	chr9:95404200-95417200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:95404400-95411400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:95404800-95415400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:95405000-95411800	Strong transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links