Variant report

Variant	rs10992407
Chromosome Location	chr9:95444306-95444307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95439856..95442869-chr9:95443168..95446358,4	MCF-7	breast:
2	chr9:95436301..95439240-chr9:95442495..95445475,2	K562	blood:
3	chr9:95432210..95434644-chr9:95442225..95447391,5	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10491806	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs10820997	0.82[JPT][hapmap]
rs10820998	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821000	0.84[ASN][1000 genomes]
rs10821001	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821003	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821004	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821005	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821011	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821014	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992367	0.82[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs10992380	0.82[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10992382	0.88[CHB][hapmap]
rs10992384	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992390	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992392	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992394	0.93[ASN][1000 genomes]
rs10992396	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992402	0.82[ASN][1000 genomes]
rs10992403	0.84[ASN][1000 genomes]
rs10992404	1.00[ASN][1000 genomes]
rs10992406	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10992408	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992409	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992414	1.00[CEU][hapmap];0.89[CHB][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992416	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992417	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992418	0.85[AMR][1000 genomes]
rs10992420	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992422	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992423	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992426	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10992433	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10992437	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992447	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10992448	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992453	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992460	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992461	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992474	0.84[EUR][1000 genomes]
rs10992476	0.85[EUR][1000 genomes]
rs1117670	0.88[CHB][hapmap]
rs11533010	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11535540	0.85[AMR][1000 genomes]
rs12057034	0.85[EUR][1000 genomes]
rs12236013	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12236754	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12236788	0.85[ASN][1000 genomes]
rs12237216	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12238691	1.00[CEU][hapmap];0.83[CHB][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12684076	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12684587	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12685080	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12685358	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12686771	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12686780	0.87[AMR][1000 genomes]
rs12686781	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1323523	0.86[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1326775	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes]
rs1407944	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1575460	0.86[CEU][hapmap];0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16908555	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs16908560	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs17366488	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1853428	0.92[CEU][hapmap]
rs1853429	0.85[EUR][1000 genomes]
rs1853468	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1974004	0.92[CEU][hapmap]
rs2038685	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2088054	0.83[AMR][1000 genomes]
rs2131919	0.82[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2146848	0.86[CEU][hapmap]
rs2148537	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2172716	0.85[AMR][1000 genomes]
rs2181584	1.00[CEU][hapmap];0.83[CHB][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs230222	1.00[YRI][hapmap]
rs2398780	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs331380	1.00[YRI][hapmap]
rs3739605	1.00[CEU][hapmap];0.88[CHB][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4141966	0.85[EUR][1000 genomes]
rs56311406	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57737182	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58952648	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60498616	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479426	0.88[CHB][hapmap]
rs67601697	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7031163	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753804	0.86[CEU][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs754600	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7850075	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7850871	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7851947	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7853617	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7855203	0.82[EUR][1000 genomes]
rs7856147	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7857105	0.84[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7857502	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7859967	0.81[EUR][1000 genomes]
rs7860628	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7862106	0.85[AMR][1000 genomes]
rs7863741	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7863882	0.88[CHB][hapmap]
rs7863890	0.82[JPT][hapmap]
rs7864889	0.82[JPT][hapmap]
rs7869603	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7871537	0.80[CEU][hapmap]
rs7875050	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs879812	0.82[JPT][hapmap]
rs912261	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs912264	0.86[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs971984	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10992407	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95441800-95444400	Enhancers	HMEC	breast
2	chr9:95443200-95450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:95443600-95444600	Enhancers	NHEK	skin
4	chr9:95443800-95444400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:95443800-95444600	Weak transcription	Spleen	Spleen
6	chr9:95443800-95444800	Enhancers	Esophagus	oesophagus
7	chr9:95444200-95444400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:95444200-95444800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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