Variant report

Variant	rs10992426
Chromosome Location	chr9:95465923-95465924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95464995..95467333-chr9:95469137..95470873,3	K562	blood:
2	chr9:95446803..95449319-chr9:95465675..95467741,2	MCF-7	breast:

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1010823	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821001	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10821002	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821003	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10821004	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10821005	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10821007	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821009	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821010	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821011	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10821012	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821014	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10821015	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821016	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821017	0.89[EUR][1000 genomes]
rs10992382	0.85[AMR][1000 genomes]
rs10992394	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992396	0.84[ASN][1000 genomes]
rs10992404	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992406	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992407	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10992408	0.84[ASN][1000 genomes]
rs10992409	0.82[ASN][1000 genomes]
rs10992412	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10992413	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992414	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992416	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10992417	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10992418	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10992419	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992420	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10992422	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992423	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992427	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992430	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992431	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992432	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10992433	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992434	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992436	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992437	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992438	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992441	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992442	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992443	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992444	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992445	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992448	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10992451	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992453	0.93[ASN][1000 genomes]
rs10992456	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992460	0.93[ASN][1000 genomes]
rs10992461	0.93[ASN][1000 genomes]
rs10992462	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10992475	0.84[EUR][1000 genomes]
rs1117670	0.85[AMR][1000 genomes]
rs1125063	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1125064	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11533010	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11535540	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12236393	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12236516	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12236747	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12236754	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12236788	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12237216	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12238691	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12683839	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12683944	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12684076	0.83[ASN][1000 genomes]
rs12684587	0.93[ASN][1000 genomes]
rs12685256	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12685257	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12685358	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12685780	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12685791	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12686058	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1407944	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1853427	0.84[EUR][1000 genomes]
rs2088055	0.90[AMR][1000 genomes]
rs2181584	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2181586	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277164	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296080	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3203916	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3739605	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4545157	0.82[EUR][1000 genomes]
rs556	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56111209	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56203846	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56311406	0.93[ASN][1000 genomes]
rs56339669	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57421019	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57720404	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57737182	0.93[ASN][1000 genomes]
rs58952648	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60173654	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60457563	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs60498616	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6479426	0.85[AMR][1000 genomes]
rs66493272	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs68022962	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs68046436	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7031163	0.93[ASN][1000 genomes]
rs7037961	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72618187	0.84[EUR][1000 genomes]
rs753802	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs753803	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs753804	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7850871	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7851947	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7860628	0.90[ASN][1000 genomes]
rs7862106	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7863882	0.85[AMR][1000 genomes]
rs7869529	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7869603	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7875227	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8181065	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs878610	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs912259	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs912261	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs976320	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs976321	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9775970	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10992426	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95458400-95466400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95460800-95473000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:95461000-95466800	Weak transcription	Primary T cells from cord blood	blood
4	chr9:95461200-95471200	Weak transcription	Fetal Brain Female	brain
5	chr9:95461200-95472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:95461400-95468400	Weak transcription	GM12878-XiMat	blood
7	chr9:95461400-95471200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:95461400-95471400	Weak transcription	Aorta	Aorta
9	chr9:95461400-95471400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:95461400-95472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:95461600-95468200	Weak transcription	Primary B cells from cord blood	blood
12	chr9:95461600-95469000	Weak transcription	Esophagus	oesophagus
13	chr9:95461800-95471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:95463600-95466200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:95463800-95466800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:95464000-95466400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:95464000-95471800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:95464200-95466400	Weak transcription	Fetal Thymus	thymus
19	chr9:95464600-95466800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:95464600-95471400	Weak transcription	Fetal Intestine Large	intestine
21	chr9:95464600-95473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr9:95464800-95470800	Weak transcription	HSMM	muscle
23	chr9:95464800-95471200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:95464800-95471200	Weak transcription	Placenta	Placenta
25	chr9:95464800-95474600	Weak transcription	K562	blood
26	chr9:95464800-95477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:95465000-95471400	Weak transcription	Fetal Muscle Leg	muscle
28	chr9:95465000-95472400	Weak transcription	A549	lung
29	chr9:95465200-95468400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:95465200-95471000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:95465200-95471200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:95465200-95471200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:95465200-95471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:95465200-95471600	Weak transcription	Fetal Stomach	stomach
35	chr9:95465200-95471800	Weak transcription	Brain Anterior Caudate	brain
36	chr9:95465200-95472200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:95465200-95474200	Weak transcription	Hela-S3	cervix
38	chr9:95465400-95470800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:95465400-95471200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:95465400-95471400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:95465400-95471400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:95465600-95471000	Weak transcription	Thymus	Thymus
43	chr9:95465600-95473400	Weak transcription	NHDF-Ad	bronchial
44	chr9:95465800-95471400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr9:95465800-95471800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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