Variant report

Variant	rs10992408
Chromosome Location	chr9:95444800-95444801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95439856..95442869-chr9:95443168..95446358,4	MCF-7	breast:
2	chr9:95436301..95439240-chr9:95442495..95445475,2	K562	blood:
3	chr9:95432210..95434644-chr9:95442225..95447391,5	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10491806	0.80[CEU][hapmap];0.89[CHB][hapmap]
rs10820997	0.86[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes]
rs10820998	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821000	0.83[ASN][1000 genomes]
rs10821001	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821003	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821004	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821005	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10821009	0.81[CHB][hapmap]
rs10821011	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821014	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992367	0.88[CHB][hapmap];0.80[AMR][1000 genomes]
rs10992380	0.88[CHB][hapmap];0.85[AMR][1000 genomes]
rs10992382	0.94[CHB][hapmap];0.93[YRI][hapmap]
rs10992384	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992390	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992392	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992394	0.92[ASN][1000 genomes]
rs10992396	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992402	0.81[ASN][1000 genomes]
rs10992403	0.83[ASN][1000 genomes]
rs10992404	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10992406	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10992407	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992412	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992414	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992416	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992417	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992418	0.81[AMR][1000 genomes]
rs10992420	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992422	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992423	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992426	0.84[ASN][1000 genomes]
rs10992433	0.82[ASN][1000 genomes]
rs10992437	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992447	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10992448	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992453	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992460	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992461	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992474	0.84[EUR][1000 genomes]
rs10992476	0.85[EUR][1000 genomes]
rs1117670	0.94[CHB][hapmap];0.93[YRI][hapmap]
rs11533010	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11535540	0.81[AMR][1000 genomes]
rs12057034	0.85[EUR][1000 genomes]
rs12236013	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12236754	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12236788	0.84[ASN][1000 genomes]
rs12237216	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12238691	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684076	0.91[EUR][1000 genomes]
rs12684587	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12685080	0.83[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12685358	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12686771	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12686780	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12686781	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1323523	0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1326775	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1407944	0.88[ASN][1000 genomes]
rs1575460	0.84[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16908555	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs16908560	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs17366488	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1853428	0.91[CEU][hapmap]
rs1853429	0.85[EUR][1000 genomes]
rs1853468	0.81[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1874128	0.82[YRI][hapmap]
rs1974004	0.91[CEU][hapmap]
rs2038685	0.87[AMR][1000 genomes]
rs2131919	0.88[CHB][hapmap];0.80[AMR][1000 genomes]
rs2146848	0.84[CEU][hapmap]
rs2148537	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2172716	0.80[AMR][1000 genomes]
rs2181584	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2398780	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs3739605	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141966	0.85[EUR][1000 genomes]
rs56311406	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57737182	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58952648	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60498616	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6479426	0.94[CHB][hapmap];0.93[YRI][hapmap]
rs67601697	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031163	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs753804	0.84[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs754600	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7850075	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7850871	0.84[ASN][1000 genomes]
rs7851947	0.88[ASN][1000 genomes]
rs7853617	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7855203	0.82[EUR][1000 genomes]
rs7856147	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7857105	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7857502	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7859967	0.81[EUR][1000 genomes]
rs7860628	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7862106	0.81[AMR][1000 genomes]
rs7863741	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7863882	0.94[CHB][hapmap];0.93[YRI][hapmap]
rs7863890	0.86[JPT][hapmap]
rs7864889	0.86[JPT][hapmap]
rs7869603	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7875050	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs879812	0.86[JPT][hapmap]
rs912261	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs912264	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs971984	0.81[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10992408	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95443200-95450600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95443800-95444800	Enhancers	Esophagus	oesophagus
3	chr9:95444200-95444800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:95444600-95444800	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links