Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95563386..95565101-chr9:95567156..95569894,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1040977	0.92[EUR][1000 genomes]
rs10992406	0.83[CEU][hapmap]
rs10992407	0.92[CEU][hapmap]
rs10992408	0.91[CEU][hapmap]
rs10992414	0.92[CEU][hapmap]
rs10992447	0.92[CEU][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs10992448	0.92[CEU][hapmap]
rs10992453	0.92[CEU][hapmap]
rs10992460	0.92[CEU][hapmap]
rs10992461	0.92[CEU][hapmap]
rs10992474	0.83[EUR][1000 genomes]
rs10992476	0.83[EUR][1000 genomes]
rs12057034	0.83[EUR][1000 genomes]
rs12236754	0.91[CEU][hapmap]
rs12238691	0.92[CEU][hapmap]
rs12686771	0.92[CEU][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs16908555	1.00[CEU][hapmap];0.80[GIH][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs16908560	1.00[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs1853428	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853429	0.83[EUR][1000 genomes]
rs2146848	1.00[YRI][hapmap]
rs2181584	0.92[CEU][hapmap]
rs2398780	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs3739605	0.92[CEU][hapmap]
rs4141966	0.83[EUR][1000 genomes]
rs7031163	0.92[CEU][hapmap]
rs7850075	1.00[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7871537	0.84[CEU][hapmap]
rs912261	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv3394460	chr9:95565031-95568629	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3435839	chr9:95565031-95568729	Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1974004	OMD	cis	parietal	SCAN
rs1974004	FBP1	cis	cerebellum	SCAN
rs1974004	ANKRD19	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95558600-95569600	Weak transcription	Right Atrium	heart
2	chr9:95566600-95569600	Weak transcription	Pancreas	Pancrea
3	chr9:95568200-95568400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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