Variant report

Variant	rs12057034
Chromosome Location	chr9:95576781-95576782
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10821001	0.86[EUR][1000 genomes]
rs10821003	0.86[EUR][1000 genomes]
rs10821004	0.88[EUR][1000 genomes]
rs10821005	0.88[EUR][1000 genomes]
rs10821011	0.87[EUR][1000 genomes]
rs10821014	0.88[EUR][1000 genomes]
rs10992396	0.85[EUR][1000 genomes]
rs10992407	0.85[EUR][1000 genomes]
rs10992408	0.85[EUR][1000 genomes]
rs10992409	0.85[EUR][1000 genomes]
rs10992412	0.85[EUR][1000 genomes]
rs10992414	0.85[EUR][1000 genomes]
rs10992416	0.85[EUR][1000 genomes]
rs10992417	0.85[EUR][1000 genomes]
rs10992420	0.86[EUR][1000 genomes]
rs10992422	0.88[EUR][1000 genomes]
rs10992423	0.86[EUR][1000 genomes]
rs10992437	0.86[EUR][1000 genomes]
rs10992448	0.88[EUR][1000 genomes]
rs10992453	0.88[EUR][1000 genomes]
rs10992460	0.89[EUR][1000 genomes]
rs10992461	0.89[EUR][1000 genomes]
rs10992474	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992475	0.97[ASN][1000 genomes]
rs10992476	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11533010	0.88[EUR][1000 genomes]
rs12236754	0.88[EUR][1000 genomes]
rs12238691	0.88[EUR][1000 genomes]
rs12684076	0.84[EUR][1000 genomes]
rs12684587	0.86[EUR][1000 genomes]
rs12685358	0.88[EUR][1000 genomes]
rs16908555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16908560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853427	0.96[ASN][1000 genomes]
rs1853428	0.83[EUR][1000 genomes]
rs1853429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1974004	0.83[EUR][1000 genomes]
rs2181584	0.88[EUR][1000 genomes]
rs2398780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739605	0.88[EUR][1000 genomes]
rs4141966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56311406	0.89[EUR][1000 genomes]
rs57737182	0.89[EUR][1000 genomes]
rs58952648	0.88[EUR][1000 genomes]
rs60498616	0.88[EUR][1000 genomes]
rs7031163	0.88[EUR][1000 genomes]
rs72618187	0.94[ASN][1000 genomes]
rs753804	0.88[EUR][1000 genomes]
rs754600	0.81[EUR][1000 genomes]
rs7850075	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7855203	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7859967	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7860628	0.89[EUR][1000 genomes]
rs7863741	0.90[EUR][1000 genomes]
rs7869603	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95572600-95583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95575800-95578200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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