Variant report

Variant	rs754600
Chromosome Location	chr9:95432029-95432030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95430814..95434525-chr9:95525652..95528883,5	K562	blood:
2	chr9:95086363..95089965-chr9:95430183..95433166,4	MCF-7	breast:
3	chr9:95379288..95383213-chr9:95431051..95434876,7	MCF-7	breast:
4	chr2:32581210..32582813-chr9:95430213..95432682,2	MCF-7	breast:
5	chr9:95055398..95057147-chr9:95429877..95432258,2	K562	blood:
6	chr9:95086180..95088905-chr9:95429811..95432518,3	K562	blood:
7	chr1:28974676..28975413-chr9:95431990..95432931,2	Hela-S3	cervix:
8	chr9:94909200..94911052-chr9:95430848..95432803,2	K562	blood:
9	chr9:95431480..95432991-chr9:96212383..96214894,2	MCF-7	breast:
10	chr9:95431397..95433567-chr9:102582521..102584580,2	MCF-7	breast:
11	chr9:95087871..95089371-chr9:95431692..95434180,2	MCF-7	breast:
12	chr9:95085195..95087256-chr9:95431626..95434427,2	MCF-7	breast:
13	chr9:95267629..95269847-chr9:95430934..95432536,2	MCF-7	breast:
14	chr9:95428069..95433526-chr9:95524054..95531235,7	MCF-7	breast:
15	chr9:95431331..95434473-chr9:95569877..95572688,3	MCF-7	breast:
16	chr17:57913384..57915166-chr9:95431056..95433761,2	MCF-7	breast:
17	chr9:95402126..95404121-chr9:95429330..95432541,3	MCF-7	breast:
18	chr4:144434628..144435180-chr9:95431875..95432494,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000225511	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000187984	Chromatin interaction
ENSG00000127080	Chromatin interaction
ENSG00000198000	Chromatin interaction
ENSG00000188312	Chromatin interaction
ENSG00000115760	Chromatin interaction
ENSG00000196305	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000185963	Chromatin interaction
ENSG00000119508	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10491806	0.87[AMR][1000 genomes]
rs10820997	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10820998	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821001	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821003	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10821004	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821005	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821011	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10821014	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992367	0.88[AMR][1000 genomes]
rs10992380	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10992384	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992390	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992392	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992394	0.97[ASN][1000 genomes]
rs10992396	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992404	0.92[ASN][1000 genomes]
rs10992406	0.92[ASN][1000 genomes]
rs10992407	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992408	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992409	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992412	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992414	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992416	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992417	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992418	0.84[AMR][1000 genomes]
rs10992420	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992422	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992423	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992437	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992448	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992453	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992460	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992461	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992474	0.80[EUR][1000 genomes]
rs10992476	0.82[EUR][1000 genomes]
rs11533010	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11535540	0.84[AMR][1000 genomes]
rs12057034	0.81[EUR][1000 genomes]
rs12236013	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12236754	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12237216	0.90[ASN][1000 genomes]
rs12238691	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12684076	0.87[EUR][1000 genomes]
rs12684587	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12685080	0.80[AMR][1000 genomes]
rs12685358	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12686780	0.91[AMR][1000 genomes]
rs12686781	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1323523	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326775	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1407944	0.81[ASN][1000 genomes]
rs1575460	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16908555	0.81[EUR][1000 genomes]
rs16908560	0.81[EUR][1000 genomes]
rs17366488	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853429	0.81[EUR][1000 genomes]
rs1853468	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2038685	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs2088054	0.86[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2131919	0.88[AMR][1000 genomes]
rs2148537	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2172716	0.88[AMR][1000 genomes]
rs2181584	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2277166	0.82[ASN][1000 genomes]
rs2398780	0.81[EUR][1000 genomes]
rs3739605	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41266683	0.80[ASN][1000 genomes]
rs4141966	0.81[EUR][1000 genomes]
rs56311406	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57737182	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58952648	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60498616	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67601697	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031163	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs753804	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7850075	0.83[EUR][1000 genomes]
rs7851947	0.81[ASN][1000 genomes]
rs7853617	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7856147	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7857105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7857502	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7860628	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7862106	0.84[AMR][1000 genomes]
rs7863741	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7863890	0.84[ASN][1000 genomes]
rs7869603	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7875050	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs879812	0.84[ASN][1000 genomes]
rs912261	0.91[ASN][1000 genomes]
rs912264	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs971984	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95430800-95433600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:95430800-95433600	Active TSS	Right Atrium	heart
3	chr9:95430800-95433800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr9:95431000-95433600	Active TSS	A549	lung
5	chr9:95431200-95433600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:95431200-95433800	Active TSS	NHLF	lung
7	chr9:95431400-95432200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:95431400-95432400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr9:95431400-95433200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:95431400-95433200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:95431400-95433200	Active TSS	Ovary	ovary
12	chr9:95431400-95433200	Active TSS	Placenta Amnion	Placenta Amnion
13	chr9:95431400-95433200	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr9:95431400-95433400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:95431400-95433400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:95431400-95433400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:95431400-95433400	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr9:95431400-95433400	Active TSS	Aorta	Aorta
19	chr9:95431400-95433400	Active TSS	Fetal Intestine Large	intestine
20	chr9:95431400-95433400	Active TSS	HMEC	breast
21	chr9:95431400-95433400	Active TSS	NHDF-Ad	bronchial
22	chr9:95431400-95433400	Active TSS	NHEK	skin
23	chr9:95431400-95433600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr9:95431400-95433600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:95431400-95433600	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr9:95431400-95433600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr9:95431400-95433600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:95431400-95433600	Active TSS	GM12878-XiMat	blood
29	chr9:95431400-95433600	Active TSS	HSMMtube	muscle
30	chr9:95431400-95433800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:95431600-95432600	Active TSS	HepG2	liver
32	chr9:95431600-95432800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:95431600-95432800	Active TSS	HUVEC	blood vessel
34	chr9:95431600-95433200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr9:95431600-95433200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:95431600-95433200	Active TSS	Fetal Brain Male	brain
37	chr9:95431600-95433200	Active TSS	Small Intestine	intestine
38	chr9:95431600-95433400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:95431600-95433400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:95431600-95433400	Active TSS	Brain Angular Gyrus	brain
41	chr9:95431600-95433400	Active TSS	Colon Smooth Muscle	Colon
42	chr9:95431600-95433400	Active TSS	Fetal Kidney	kidney
43	chr9:95431600-95433400	Active TSS	Lung	lung
44	chr9:95431600-95433400	Active TSS	Right Ventricle	heart
45	chr9:95431600-95433400	Active TSS	Hela-S3	cervix
46	chr9:95431600-95433400	Active TSS	HSMM	muscle
47	chr9:95431600-95433600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:95431600-95433600	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr9:95431600-95433600	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr9:95431600-95433600	Active TSS	Brain Cingulate Gyrus	brain

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