Variant report

Variant	rs10992390
Chromosome Location	chr9:95413718-95413719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95411739..95414427-chr9:95417430..95420333,2	MCF-7	breast:
2	chr9:95402777..95405673-chr9:95412190..95414969,2	K562	blood:
3	chr9:95405868..95407824-chr9:95411914..95414887,3	MCF-7	breast:
4	chr9:95413093..95414822-chr9:95431750..95433461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10491806	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes]
rs10820997	0.82[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs10820998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821001	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821003	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821004	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821005	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821009	0.81[CHB][hapmap]
rs10821011	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821014	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992367	0.91[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs10992380	0.91[CEU][hapmap];0.88[CHB][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992382	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10992384	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992394	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10992396	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992404	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10992406	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10992407	0.86[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992408	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992409	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992414	0.86[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992416	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992417	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992420	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992422	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992423	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992437	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992447	0.84[CEU][hapmap]
rs10992448	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992453	0.86[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992460	0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs10992461	0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs1117670	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs11533010	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12236013	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236754	0.84[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12237216	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12238691	0.86[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12684076	0.84[EUR][1000 genomes]
rs12684587	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685080	0.82[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12685358	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12686771	0.84[CEU][hapmap]
rs12686780	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686781	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1323523	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1326775	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1575460	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17366488	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853468	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1874128	0.82[YRI][hapmap]
rs2038685	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2088054	0.84[AMR][1000 genomes]
rs2131919	0.91[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs2146848	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2148537	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2172716	0.86[AMR][1000 genomes]
rs2181584	0.86[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2277166	0.81[ASN][1000 genomes]
rs2277169	0.82[EUR][1000 genomes]
rs3739605	0.84[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4141966	0.81[CEU][hapmap]
rs56311406	0.86[EUR][1000 genomes]
rs57737182	0.86[EUR][1000 genomes]
rs58952648	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60498616	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479426	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes]
rs67601697	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7031163	0.84[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs753804	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs754600	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7853617	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7856147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7860628	0.86[EUR][1000 genomes]
rs7863741	0.87[EUR][1000 genomes]
rs7863882	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7863890	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7864889	0.82[JPT][hapmap]
rs7869603	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7875050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs879812	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs912261	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs912264	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs971984	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
3	chr9:95384800-95421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:95391800-95421000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:95392000-95414600	Strong transcription	Duodenum Mucosa	Duodenum
6	chr9:95392000-95419600	Strong transcription	Primary T cells from cord blood	blood
7	chr9:95392400-95420800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr9:95393200-95421200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:95393200-95421600	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr9:95393600-95421000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr9:95393800-95414000	Strong transcription	Fetal Thymus	thymus
12	chr9:95393800-95414000	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr9:95393800-95414400	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr9:95393800-95419200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:95393800-95421000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:95394000-95420800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:95394200-95418800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:95394200-95419200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr9:95395000-95416600	Strong transcription	GM12878-XiMat	blood
20	chr9:95396000-95420000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:95396800-95422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:95397200-95417800	Strong transcription	Liver	Liver
23	chr9:95397400-95417000	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr9:95398200-95420800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:95399000-95414000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:95400400-95415600	Strong transcription	HUVEC	blood vessel
27	chr9:95400600-95414000	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr9:95400600-95417600	Weak transcription	Psoas Muscle	Psoas
29	chr9:95401200-95421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:95401200-95422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:95401400-95417200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:95404200-95417200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:95404800-95415400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:95405000-95415200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:95405000-95415600	Strong transcription	NHEK	skin
36	chr9:95407800-95414000	Strong transcription	Fetal Lung	lung
37	chr9:95408000-95416400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr9:95408000-95420800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:95408400-95421200	Strong transcription	Brain Germinal Matrix	brain
40	chr9:95408600-95414000	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr9:95408600-95420800	Strong transcription	Fetal Brain Female	brain
42	chr9:95408800-95414200	Strong transcription	Fetal Intestine Large	intestine
43	chr9:95408800-95421000	Strong transcription	Thymus	Thymus
44	chr9:95408800-95426800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:95409600-95414000	Strong transcription	HMEC	breast
46	chr9:95409600-95414400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:95409600-95415600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:95409600-95417400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr9:95409600-95421200	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:95409800-95417200	Strong transcription	Fetal Muscle Leg	muscle

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