Variant report

Variant	rs1323523
Chromosome Location	chr9:95393049-95393050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95391876..95393379-chr9:95395361..95397052,2	K562	blood:
2	chr9:95387244..95389622-chr9:95392368..95395776,3	K562	blood:
3	chr9:95384797..95388676-chr9:95391672..95394048,3	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10491806	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs10820997	0.83[AMR][1000 genomes]
rs10820998	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821001	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821003	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821004	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821005	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821011	0.92[AMR][1000 genomes]
rs10821014	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992367	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10992380	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992382	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes]
rs10992384	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992390	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992392	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992396	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992406	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs10992407	0.86[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992408	0.84[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992409	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992412	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992414	0.86[CEU][hapmap];0.89[CHB][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992416	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992417	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992418	0.82[AMR][1000 genomes]
rs10992420	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992422	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992423	0.93[AMR][1000 genomes]
rs10992437	0.93[AMR][1000 genomes]
rs10992447	0.84[CEU][hapmap]
rs10992448	0.84[CEU][hapmap];0.88[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992453	0.86[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992460	0.84[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes]
rs10992461	0.84[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes]
rs1117670	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes]
rs11533010	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11535540	0.82[AMR][1000 genomes]
rs12236013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12236754	0.84[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12238691	0.86[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12684587	0.86[AMR][1000 genomes]
rs12685358	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686771	0.84[CEU][hapmap]
rs12686780	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12686781	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1326775	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1575460	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17366488	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1853468	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2038685	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2088054	0.88[AMR][1000 genomes]
rs2088055	0.84[AMR][1000 genomes]
rs2131919	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs2146848	1.00[CEU][hapmap]
rs2148537	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2172716	0.90[AMR][1000 genomes]
rs2181584	0.86[CEU][hapmap];0.83[CHB][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs230222	1.00[YRI][hapmap]
rs331380	1.00[YRI][hapmap]
rs3739605	0.84[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4141966	0.81[CEU][hapmap]
rs56311406	0.83[AMR][1000 genomes]
rs57737182	0.83[AMR][1000 genomes]
rs58952648	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60498616	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479426	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes]
rs67601697	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7031163	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs753804	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs754600	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7853617	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7856147	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7857105	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7857502	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7860628	0.83[AMR][1000 genomes]
rs7862106	0.82[AMR][1000 genomes]
rs7863741	0.81[AMR][1000 genomes]
rs7863882	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes]
rs7869603	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7875050	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs912261	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs912264	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs971984	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1323523	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:95370600-95394000	Weak transcription	Psoas Muscle	Psoas
3	chr9:95371400-95398200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:95371800-95399000	Weak transcription	Aorta	Aorta
5	chr9:95371800-95407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:95372000-95394200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr9:95373200-95399200	Weak transcription	Small Intestine	intestine
9	chr9:95374000-95394000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:95375200-95405000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:95375400-95403000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:95378200-95393800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:95378200-95394000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:95378200-95394000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:95378200-95394200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:95378200-95403600	Weak transcription	Fetal Brain Male	brain
17	chr9:95378400-95394000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:95378800-95393800	Weak transcription	Fetal Kidney	kidney
19	chr9:95378800-95394000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:95379600-95394400	Weak transcription	NHDF-Ad	bronchial
21	chr9:95380000-95397200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:95380800-95393800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:95380800-95400600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
25	chr9:95381000-95393800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:95381400-95402800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr9:95381600-95396000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:95381800-95393800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:95382000-95394600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:95382200-95393800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr9:95382600-95393800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:95382800-95393200	Weak transcription	Right Ventricle	heart
33	chr9:95382800-95393800	Weak transcription	Brain Angular Gyrus	brain
34	chr9:95382800-95393800	Weak transcription	Pancreas	Pancrea
35	chr9:95382800-95394000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:95382800-95394000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:95382800-95394400	Weak transcription	Colonic Mucosa	Colon
38	chr9:95382800-95397000	Weak transcription	Fetal Heart	heart
39	chr9:95383000-95393600	Weak transcription	Spleen	Spleen
40	chr9:95383000-95395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr9:95383200-95393800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:95383200-95394200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:95383200-95394200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:95383400-95393800	Weak transcription	Gastric	stomach
45	chr9:95383400-95394000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:95383400-95394000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr9:95383400-95394200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:95383600-95393200	Weak transcription	Fetal Intestine Large	intestine
49	chr9:95384000-95393200	Weak transcription	Fetal Intestine Small	intestine
50	chr9:95384000-95394000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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