Variant report

Variant	rs2146848
Chromosome Location	chr9:95408409-95408410
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95406971..95409347-chr9:95410365..95412966,3	K562	blood:

rs_ID	r²[population]
rs1040977	0.84[EUR][1000 genomes]
rs10491806	1.00[CEU][hapmap]
rs10820998	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10992367	0.91[CEU][hapmap]
rs10992380	0.91[CEU][hapmap]
rs10992382	0.91[CEU][hapmap]
rs10992384	1.00[CEU][hapmap]
rs10992390	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992392	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10992407	0.86[CEU][hapmap]
rs10992408	0.84[CEU][hapmap]
rs10992414	0.86[CEU][hapmap]
rs10992447	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10992448	0.84[CEU][hapmap]
rs10992453	0.86[CEU][hapmap]
rs10992460	0.84[CEU][hapmap]
rs10992461	0.84[CEU][hapmap]
rs1117670	0.91[CEU][hapmap]
rs12236013	0.82[EUR][1000 genomes]
rs12236754	0.84[CEU][hapmap]
rs12238691	0.86[CEU][hapmap]
rs12686771	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs1323523	1.00[CEU][hapmap]
rs1326775	1.00[CEU][hapmap]
rs1575460	1.00[CEU][hapmap]
rs17366488	0.82[EUR][1000 genomes]
rs1853428	1.00[YRI][hapmap]
rs1853468	1.00[CEU][hapmap]
rs1974004	1.00[YRI][hapmap]
rs2131919	0.91[CEU][hapmap]
rs2148537	1.00[CEU][hapmap]
rs2181584	0.86[CEU][hapmap]
rs2277169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3739605	0.84[CEU][hapmap]
rs4141966	0.81[CEU][hapmap]
rs6479426	0.91[CEU][hapmap]
rs7031163	0.84[CEU][hapmap]
rs7856147	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7857105	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7857502	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7863882	0.91[CEU][hapmap]
rs7875050	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs912264	1.00[CEU][hapmap]
rs971984	1.00[CEU][hapmap]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
3	chr9:95384800-95421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:95390200-95411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:95391800-95410600	Strong transcription	Left Ventricle	heart
6	chr9:95391800-95421000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:95392000-95414600	Strong transcription	Duodenum Mucosa	Duodenum
8	chr9:95392000-95419600	Strong transcription	Primary T cells from cord blood	blood
9	chr9:95392200-95410800	Strong transcription	Brain Anterior Caudate	brain
10	chr9:95392400-95420800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:95393200-95412000	Strong transcription	Right Ventricle	heart
12	chr9:95393200-95421200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:95393200-95421600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:95393600-95421000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:95393800-95412800	Strong transcription	Placenta	Placenta
16	chr9:95393800-95413400	Strong transcription	Dnd41	blood
17	chr9:95393800-95414000	Strong transcription	Fetal Thymus	thymus
18	chr9:95393800-95414000	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr9:95393800-95414400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr9:95393800-95419200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:95393800-95421000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:95394000-95420800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr9:95394200-95418800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:95394200-95419200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:95395000-95416600	Strong transcription	GM12878-XiMat	blood
26	chr9:95396000-95420000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:95396800-95409200	Weak transcription	NHDF-Ad	bronchial
28	chr9:95396800-95422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:95397200-95412800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:95397200-95417800	Strong transcription	Liver	Liver
31	chr9:95397400-95408600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:95397400-95409000	Strong transcription	Brain Hippocampus Middle	brain
33	chr9:95397400-95412000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:95397400-95412000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr9:95397400-95417000	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:95397600-95408600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr9:95397600-95408800	Strong transcription	Fetal Muscle Trunk	muscle
38	chr9:95397600-95412000	Strong transcription	Adipose Nuclei	Adipose
39	chr9:95397600-95412800	Weak transcription	Fetal Heart	heart
40	chr9:95397800-95410400	Strong transcription	Brain Substantia Nigra	brain
41	chr9:95398200-95420800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:95399000-95414000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:95400400-95415600	Strong transcription	HUVEC	blood vessel
44	chr9:95400600-95414000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr9:95400600-95417600	Weak transcription	Psoas Muscle	Psoas
46	chr9:95401200-95421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:95401200-95422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:95401400-95408600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr9:95401400-95417200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:95402000-95408800	Strong transcription	H1 Cell Line	embryonic stem cell

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