Variant report

Variant	rs10992384
Chromosome Location	chr9:95372761-95372762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr9:95372617-95372834	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95371374..95373769-chr9:95381769..95384696,2	K562	blood:

Variant related genes	Relation type
CENPP	TF binding region
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10491806	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10820997	0.83[ASW][hapmap];0.84[MEX][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs10820998	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821001	0.86[AMR][1000 genomes]
rs10821003	0.86[AMR][1000 genomes]
rs10821004	0.86[AMR][1000 genomes]
rs10821005	0.86[AMR][1000 genomes]
rs10821009	0.84[MEX][hapmap]
rs10821011	0.85[AMR][1000 genomes]
rs10821012	0.84[MEX][hapmap]
rs10821014	0.86[AMR][1000 genomes]
rs10992367	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10992380	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992382	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10992390	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992392	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992394	0.80[AFR][1000 genomes]
rs10992396	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992404	0.81[AFR][1000 genomes]
rs10992406	0.94[CHB][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs10992407	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992408	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992409	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992412	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992414	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs10992416	0.86[AMR][1000 genomes]
rs10992417	0.86[AMR][1000 genomes]
rs10992420	0.86[AMR][1000 genomes]
rs10992422	0.86[AMR][1000 genomes]
rs10992423	0.86[AMR][1000 genomes]
rs10992434	0.84[MEX][hapmap]
rs10992437	0.86[AMR][1000 genomes]
rs10992444	0.84[MEX][hapmap]
rs10992445	0.84[MEX][hapmap]
rs10992447	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs10992448	0.84[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes]
rs10992453	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs10992460	0.84[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs10992461	0.84[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap]
rs1117670	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11533010	0.86[AMR][1000 genomes]
rs12236013	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12236754	0.82[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes]
rs12237216	0.81[AFR][1000 genomes]
rs12238691	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs12685080	0.88[YRI][hapmap];0.81[AFR][1000 genomes]
rs12685257	0.84[MEX][hapmap]
rs12685358	0.86[AMR][1000 genomes]
rs12685780	0.84[MEX][hapmap]
rs12686771	0.84[CEU][hapmap];0.93[TSI][hapmap]
rs12686780	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12686781	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323523	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1326775	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1552908	0.85[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs1575460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17366488	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1853468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1874128	0.83[ASW][hapmap];0.82[YRI][hapmap];0.80[ASN][1000 genomes]
rs1980705	0.83[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs2038685	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2088054	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2088055	0.97[ASN][1000 genomes]
rs2131919	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2146848	1.00[CEU][hapmap]
rs2148537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172716	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2181584	0.84[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes]
rs2274413	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2281888	0.83[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs2296080	0.84[MEX][hapmap]
rs3203916	0.84[MEX][hapmap]
rs3739605	0.84[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes]
rs556	0.84[MEX][hapmap]
rs58952648	0.86[AMR][1000 genomes]
rs60498616	0.86[AMR][1000 genomes]
rs6479426	0.91[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67601697	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7031163	0.84[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap]
rs753804	0.86[AMR][1000 genomes]
rs754600	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7850075	0.91[MEX][hapmap];0.82[TSI][hapmap]
rs7853617	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7856147	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7857105	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7857502	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7863882	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7863890	0.84[MEX][hapmap]
rs7869603	0.86[AMR][1000 genomes]
rs7875050	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs879812	0.84[MEX][hapmap]
rs912261	0.91[ASW][hapmap];0.94[CHB][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap]
rs912264	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs971984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10992384	FBP1	cis	cerebellum	SCAN
rs10992384	OMD	cis	parietal	SCAN
rs10992384	CENPP	cis	multi-tissue	Pritchard
rs10992384	ANKRD19	cis	cerebellum	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95362800-95373000	Weak transcription	HMEC	breast
2	chr9:95363400-95374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:95364000-95372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:95364400-95372800	Weak transcription	NHEK	skin
6	chr9:95366200-95373000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:95366400-95375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:95366600-95373600	Weak transcription	Thymus	Thymus
9	chr9:95367400-95373800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:95367400-95380600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:95369000-95372800	Enhancers	Fetal Muscle Leg	muscle
12	chr9:95369000-95373200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:95369400-95372800	Enhancers	Adipose Nuclei	Adipose
14	chr9:95369400-95373800	Enhancers	NHDF-Ad	bronchial
15	chr9:95369600-95373000	Weak transcription	Small Intestine	intestine
16	chr9:95369600-95373200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:95369800-95374200	Weak transcription	Liver	Liver
18	chr9:95369800-95374200	Weak transcription	GM12878-XiMat	blood
19	chr9:95370000-95372800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:95370200-95372800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:95370200-95373000	Enhancers	Fetal Muscle Trunk	muscle
22	chr9:95370200-95376200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:95370400-95373000	Weak transcription	Lung	lung
24	chr9:95370400-95373000	Weak transcription	Dnd41	blood
25	chr9:95370400-95373200	Weak transcription	Fetal Intestine Large	intestine
26	chr9:95370600-95373000	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr9:95370600-95394000	Weak transcription	Psoas Muscle	Psoas
28	chr9:95370800-95373000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr9:95370800-95373800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr9:95370800-95374200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:95370800-95377800	Weak transcription	Fetal Brain Male	brain
32	chr9:95370800-95380400	Weak transcription	Fetal Heart	heart
33	chr9:95371000-95373000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr9:95371000-95373000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:95371000-95373600	Enhancers	Ovary	ovary
36	chr9:95371000-95373800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:95371200-95373200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr9:95371200-95375200	Weak transcription	NH-A	brain
39	chr9:95371200-95379800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:95371400-95373000	Weak transcription	Primary T cells from cord blood	blood
41	chr9:95371400-95373200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:95371400-95373400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:95371400-95373800	Genic enhancers	NHLF	lung
44	chr9:95371400-95398200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr9:95371600-95373000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr9:95371600-95373000	Weak transcription	Fetal Intestine Small	intestine
47	chr9:95371600-95373200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:95371600-95373200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:95371600-95373200	Weak transcription	A549	lung
50	chr9:95371600-95373800	Weak transcription	Osteobl	bone

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