Variant report

Variant	rs10992404
Chromosome Location	chr9:95440628-95440629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95439856..95442869-chr9:95443168..95446358,4	MCF-7	breast:
2	chr9:95440290..95443133-chr9:95467727..95470329,2	MCF-7	breast:

Extended variants
information (count: 127 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1010823	0.80[EUR][1000 genomes]
rs10820998	0.88[ASN][1000 genomes]
rs10821000	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821001	0.90[ASN][1000 genomes]
rs10821002	0.83[EUR][1000 genomes]
rs10821003	0.90[ASN][1000 genomes]
rs10821004	0.88[ASN][1000 genomes]
rs10821005	0.87[ASN][1000 genomes]
rs10821007	0.80[EUR][1000 genomes]
rs10821009	0.80[EUR][1000 genomes]
rs10821010	0.80[EUR][1000 genomes]
rs10821011	0.85[ASN][1000 genomes]
rs10821012	0.80[EUR][1000 genomes]
rs10821014	0.84[ASN][1000 genomes]
rs10821015	0.80[EUR][1000 genomes]
rs10821016	0.80[EUR][1000 genomes]
rs10821017	0.88[EUR][1000 genomes]
rs10992382	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10992384	0.81[AFR][1000 genomes]
rs10992390	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10992392	0.88[ASN][1000 genomes]
rs10992394	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992396	0.99[ASN][1000 genomes]
rs10992402	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992403	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992406	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992407	1.00[ASN][1000 genomes]
rs10992408	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10992409	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992412	0.99[ASN][1000 genomes]
rs10992413	0.83[EUR][1000 genomes]
rs10992414	0.90[ASN][1000 genomes]
rs10992416	0.90[ASN][1000 genomes]
rs10992417	0.90[ASN][1000 genomes]
rs10992419	0.83[EUR][1000 genomes]
rs10992420	0.90[ASN][1000 genomes]
rs10992422	0.88[ASN][1000 genomes]
rs10992423	0.87[ASN][1000 genomes]
rs10992426	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992427	0.80[EUR][1000 genomes]
rs10992430	0.80[EUR][1000 genomes]
rs10992431	0.80[EUR][1000 genomes]
rs10992432	0.80[EUR][1000 genomes]
rs10992433	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992434	0.80[EUR][1000 genomes]
rs10992436	0.80[EUR][1000 genomes]
rs10992437	0.85[ASN][1000 genomes]
rs10992438	0.80[EUR][1000 genomes]
rs10992441	0.80[EUR][1000 genomes]
rs10992442	0.80[EUR][1000 genomes]
rs10992443	0.80[EUR][1000 genomes]
rs10992444	0.80[EUR][1000 genomes]
rs10992448	0.83[ASN][1000 genomes]
rs10992451	0.80[EUR][1000 genomes]
rs10992453	0.85[ASN][1000 genomes]
rs10992456	0.80[EUR][1000 genomes]
rs10992460	0.85[ASN][1000 genomes]
rs10992461	0.85[ASN][1000 genomes]
rs10992475	0.83[EUR][1000 genomes]
rs1117670	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1125063	0.80[EUR][1000 genomes]
rs1125064	0.80[EUR][1000 genomes]
rs11533010	0.88[ASN][1000 genomes]
rs12236013	0.88[ASN][1000 genomes]
rs12236393	0.80[EUR][1000 genomes]
rs12236516	0.80[EUR][1000 genomes]
rs12236747	0.80[EUR][1000 genomes]
rs12236754	0.85[ASN][1000 genomes]
rs12236788	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12237216	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238691	0.86[ASN][1000 genomes]
rs12683944	0.80[EUR][1000 genomes]
rs12684587	0.84[ASN][1000 genomes]
rs12685080	0.83[ASN][1000 genomes]
rs12685256	0.83[EUR][1000 genomes]
rs12685257	0.80[EUR][1000 genomes]
rs12685358	0.88[ASN][1000 genomes]
rs12685780	0.80[EUR][1000 genomes]
rs12685791	0.80[EUR][1000 genomes]
rs12686058	0.80[EUR][1000 genomes]
rs12686780	0.81[AFR][1000 genomes]
rs12686781	0.81[AFR][1000 genomes]
rs1407944	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1575460	0.81[AFR][1000 genomes]
rs17366488	0.90[ASN][1000 genomes]
rs1853427	0.83[EUR][1000 genomes]
rs2088055	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2181584	0.88[ASN][1000 genomes]
rs2181586	0.80[EUR][1000 genomes]
rs2277164	0.85[EUR][1000 genomes]
rs3203916	0.80[EUR][1000 genomes]
rs3739605	0.88[ASN][1000 genomes]
rs556	0.80[EUR][1000 genomes]
rs56203846	0.80[EUR][1000 genomes]
rs56311406	0.85[ASN][1000 genomes]
rs56339669	0.80[EUR][1000 genomes]
rs57720404	0.80[EUR][1000 genomes]
rs57737182	0.85[ASN][1000 genomes]
rs58952648	0.87[ASN][1000 genomes]
rs60173654	0.80[EUR][1000 genomes]
rs60498616	0.86[ASN][1000 genomes]
rs6479426	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66493272	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67601697	0.88[ASN][1000 genomes]
rs68046436	0.80[EUR][1000 genomes]
rs7031163	0.85[ASN][1000 genomes]
rs72618187	0.83[EUR][1000 genomes]
rs753803	0.80[EUR][1000 genomes]
rs753804	0.85[ASN][1000 genomes]
rs754600	0.92[ASN][1000 genomes]
rs7850871	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7851947	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7853617	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7856147	0.87[ASN][1000 genomes]
rs7857105	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7857502	0.88[ASN][1000 genomes]
rs7860628	0.82[ASN][1000 genomes]
rs7863882	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7869529	0.80[EUR][1000 genomes]
rs7869603	0.86[ASN][1000 genomes]
rs7875050	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7875227	0.80[EUR][1000 genomes]
rs8181065	0.80[EUR][1000 genomes]
rs878610	0.80[EUR][1000 genomes]
rs912261	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs976320	0.80[EUR][1000 genomes]
rs9775970	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10992404	BICD2	Cis_1M	lymphoblastoid	RTeQTL
rs10992404	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95433400-95442800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95433800-95441800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95433800-95444000	Weak transcription	Fetal Brain Female	brain
4	chr9:95434000-95441800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:95434000-95441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:95434000-95442400	Weak transcription	NHDF-Ad	bronchial
7	chr9:95434200-95441800	Weak transcription	Esophagus	oesophagus
8	chr9:95434200-95441800	Weak transcription	NHEK	skin
9	chr9:95434200-95442800	Weak transcription	Placenta	Placenta
10	chr9:95439000-95440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:95439600-95442200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:95439800-95441400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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