Variant report

Variant	rs10821007
Chromosome Location	chr9:95485782-95485783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95471128..95473900-chr9:95482099..95486004,3	K562	blood:
2	chr9:95476880..95479198-chr9:95481003..95486701,5	MCF-7	breast:
3	chr9:95086396..95088682-chr9:95485329..95488203,2	MCF-7	breast:
4	chr9:95483929..95486078-chr9:95495007..95497382,2	MCF-7	breast:
5	chr9:95481018..95487899-chr9:95523684..95529726,11	MCF-7	breast:
6	chr9:95478967..95480726-chr9:95484940..95487437,2	MCF-7	breast:
7	chr9:95484940..95486655-chr9:95500825..95503723,2	K562	blood:
8	chr9:95474084..95476947-chr9:95483960..95486905,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188312	Chromatin interaction
ENSG00000198000	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1010823	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821000	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821001	0.85[ASN][1000 genomes]
rs10821002	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821003	0.85[ASN][1000 genomes]
rs10821004	0.85[ASN][1000 genomes]
rs10821005	0.83[ASN][1000 genomes]
rs10821009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821011	0.84[ASN][1000 genomes]
rs10821012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821014	0.83[ASN][1000 genomes]
rs10821015	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821016	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992402	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992403	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992404	0.80[EUR][1000 genomes]
rs10992406	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992413	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992414	0.83[ASN][1000 genomes]
rs10992416	0.85[ASN][1000 genomes]
rs10992417	0.85[ASN][1000 genomes]
rs10992418	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10992419	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992420	0.85[ASN][1000 genomes]
rs10992422	0.85[ASN][1000 genomes]
rs10992423	0.85[ASN][1000 genomes]
rs10992426	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992430	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992432	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992433	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992434	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992437	0.84[ASN][1000 genomes]
rs10992438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992442	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992445	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992448	0.82[ASN][1000 genomes]
rs10992451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992453	0.84[ASN][1000 genomes]
rs10992456	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992460	0.84[ASN][1000 genomes]
rs10992461	0.84[ASN][1000 genomes]
rs10992462	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992472	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1125063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1125064	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11533010	0.85[ASN][1000 genomes]
rs11535540	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12236393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236516	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236747	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236754	0.84[ASN][1000 genomes]
rs12236788	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12237216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12238691	0.85[ASN][1000 genomes]
rs12683839	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12683944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12684587	0.83[ASN][1000 genomes]
rs12685080	0.91[ASN][1000 genomes]
rs12685256	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685257	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685358	0.85[ASN][1000 genomes]
rs12685780	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12686058	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407944	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552908	0.92[AMR][1000 genomes]
rs1874128	0.88[AMR][1000 genomes]
rs1980705	0.87[AMR][1000 genomes]
rs2038686	0.88[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2181584	0.85[ASN][1000 genomes]
rs2181586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274413	0.88[AMR][1000 genomes]
rs2277164	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277166	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2281888	0.87[AMR][1000 genomes]
rs2296080	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3203916	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739605	0.84[ASN][1000 genomes]
rs41266683	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4545157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs556	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56111209	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56311406	0.84[ASN][1000 genomes]
rs56339669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57421019	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57720404	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57737182	0.84[ASN][1000 genomes]
rs58045868	0.85[AMR][1000 genomes]
rs58952648	0.83[ASN][1000 genomes]
rs60173654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60457563	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60498616	0.85[ASN][1000 genomes]
rs66493272	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68022962	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68046436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031163	0.84[ASN][1000 genomes]
rs7037961	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753802	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753804	0.84[ASN][1000 genomes]
rs7850871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7851947	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7860628	0.81[ASN][1000 genomes]
rs7862106	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7863890	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7869529	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869603	0.85[ASN][1000 genomes]
rs7875227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878610	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs879812	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs912259	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912261	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs976320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs976321	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999632	chr9:95483885-95491267	Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821007	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
2	chr9:95471200-95486000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:95471400-95487000	Strong transcription	Fetal Muscle Leg	muscle
4	chr9:95471400-95489000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:95471600-95489000	Strong transcription	Fetal Stomach	stomach
6	chr9:95471800-95486000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:95471800-95487600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr9:95471800-95492400	Strong transcription	Dnd41	blood
9	chr9:95472000-95489600	Strong transcription	Fetal Intestine Small	intestine
10	chr9:95474800-95485800	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr9:95474800-95486200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:95475000-95491600	Strong transcription	Primary T cells from cord blood	blood
13	chr9:95475000-95492200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr9:95475400-95486200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:95475600-95491800	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:95475600-95492000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:95475600-95499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr9:95475800-95492000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr9:95475800-95492200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:95476000-95489200	Strong transcription	Primary hematopoietic stem cells	blood
21	chr9:95476400-95489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:95476400-95489400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:95476600-95489000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:95477800-95486800	Weak transcription	Right Atrium	heart
25	chr9:95478600-95489200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:95478600-95490400	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr9:95479200-95498200	Weak transcription	Stomach Mucosa	stomach
28	chr9:95479400-95486200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr9:95479400-95491600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr9:95479400-95492600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr9:95480000-95489400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr9:95481800-95486800	Weak transcription	Psoas Muscle	Psoas
33	chr9:95482400-95486000	Genic enhancers	Primary B cells from cord blood	blood
34	chr9:95482600-95497800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:95482600-95498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr9:95482800-95485800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
37	chr9:95482800-95499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr9:95483000-95487000	Strong transcription	Spleen	Spleen
39	chr9:95483000-95487000	Weak transcription	A549	lung
40	chr9:95483200-95490600	Weak transcription	Small Intestine	intestine
41	chr9:95483400-95485800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr9:95483400-95497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr9:95483800-95490200	Weak transcription	Fetal Kidney	kidney
44	chr9:95484000-95491600	Weak transcription	Fetal Heart	heart
45	chr9:95484200-95488800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr9:95484200-95498000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr9:95484400-95487800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:95484400-95489200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:95484400-95490800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:95484600-95487600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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