Variant report

Variant	rs58045868
Chromosome Location	chr9:95368380-95368381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95368081..95371293-chr9:95378111..95381332,3	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1010823	0.81[AMR][1000 genomes]
rs10821000	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10821002	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10821007	0.85[AMR][1000 genomes]
rs10821009	0.85[AMR][1000 genomes]
rs10821010	0.85[AMR][1000 genomes]
rs10821012	0.85[AMR][1000 genomes]
rs10821015	0.83[AMR][1000 genomes]
rs10821016	0.81[AMR][1000 genomes]
rs10992382	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10992394	0.83[AMR][1000 genomes]
rs10992402	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992403	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10992413	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992419	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992427	0.85[AMR][1000 genomes]
rs10992430	0.85[AMR][1000 genomes]
rs10992431	0.85[AMR][1000 genomes]
rs10992432	0.85[AMR][1000 genomes]
rs10992434	0.85[AMR][1000 genomes]
rs10992436	0.85[AMR][1000 genomes]
rs10992438	0.85[AMR][1000 genomes]
rs10992441	0.85[AMR][1000 genomes]
rs10992442	0.85[AMR][1000 genomes]
rs10992443	0.85[AMR][1000 genomes]
rs10992444	0.85[AMR][1000 genomes]
rs10992445	0.85[AMR][1000 genomes]
rs10992451	0.81[AMR][1000 genomes]
rs10992456	0.81[AMR][1000 genomes]
rs1117670	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1125063	0.81[AMR][1000 genomes]
rs1125064	0.81[AMR][1000 genomes]
rs12236393	0.85[AMR][1000 genomes]
rs12236516	0.83[AMR][1000 genomes]
rs12236747	0.83[AMR][1000 genomes]
rs12683944	0.85[AMR][1000 genomes]
rs12685256	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12685257	0.83[AMR][1000 genomes]
rs12685780	0.81[AMR][1000 genomes]
rs12685791	0.81[AMR][1000 genomes]
rs12686058	0.83[AMR][1000 genomes]
rs1552908	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1874128	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1980705	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2038685	0.80[ASN][1000 genomes]
rs2038686	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2088055	0.81[EUR][1000 genomes]
rs2181586	0.85[AMR][1000 genomes]
rs2274413	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2277166	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2281888	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296080	0.85[AMR][1000 genomes]
rs3203916	0.85[AMR][1000 genomes]
rs41266683	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs556	0.85[AMR][1000 genomes]
rs56203846	0.85[AMR][1000 genomes]
rs56339669	0.85[AMR][1000 genomes]
rs57421019	0.83[AMR][1000 genomes]
rs57720404	0.83[AMR][1000 genomes]
rs60173654	0.85[AMR][1000 genomes]
rs6479426	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66493272	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68046436	0.85[AMR][1000 genomes]
rs7037961	0.85[AMR][1000 genomes]
rs753802	0.85[AMR][1000 genomes]
rs753803	0.85[AMR][1000 genomes]
rs7863882	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7863890	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7864889	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7869529	0.85[AMR][1000 genomes]
rs7875227	0.85[AMR][1000 genomes]
rs8181065	0.85[AMR][1000 genomes]
rs878610	0.81[AMR][1000 genomes]
rs879812	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs912259	0.84[AMR][1000 genomes]
rs976320	0.85[AMR][1000 genomes]
rs976321	0.83[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58045868	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95360200-95370200	Weak transcription	Fetal Heart	heart
2	chr9:95362800-95373000	Weak transcription	HMEC	breast
3	chr9:95363000-95370200	Weak transcription	Right Atrium	heart
4	chr9:95363000-95371400	Weak transcription	Right Ventricle	heart
5	chr9:95363200-95371600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:95363400-95374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:95364000-95368600	Weak transcription	Osteobl	bone
9	chr9:95364000-95369400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:95364000-95370000	Weak transcription	Aorta	Aorta
11	chr9:95364000-95370400	Weak transcription	Ovary	ovary
12	chr9:95364000-95372800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:95364400-95370200	Weak transcription	HSMMtube	muscle
14	chr9:95364400-95372800	Weak transcription	NHEK	skin
15	chr9:95364600-95368800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:95364800-95370400	Weak transcription	Gastric	stomach
17	chr9:95366200-95370000	Weak transcription	Pancreas	Pancrea
18	chr9:95366200-95373000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:95366400-95369400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:95366400-95370800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:95366400-95371400	Weak transcription	Esophagus	oesophagus
22	chr9:95366400-95375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:95366600-95369800	Weak transcription	NH-A	brain
24	chr9:95366600-95370200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:95366600-95373600	Weak transcription	Thymus	Thymus
26	chr9:95367400-95373800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:95367400-95380600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:95367600-95368600	Weak transcription	Fetal Kidney	kidney
29	chr9:95368000-95368600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:95368200-95370000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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