Variant report

Variant	rs56339669
Chromosome Location	chr9:95481975-95481976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95088057..95089716-chr9:95480254..95482270,2	MCF-7	breast:
2	chr9:95449248..95451642-chr9:95479901..95483272,3	K562	blood:
3	chr9:95476067..95478139-chr9:95480863..95482474,2	K562	blood:
4	chr9:95476880..95479198-chr9:95481003..95486701,5	MCF-7	breast:
5	chr9:95481964..95484058-chr9:95531811..95534209,2	MCF-7	breast:
6	chr9:95431172..95435271-chr9:95479982..95485530,5	MCF-7	breast:
7	chr9:95481018..95487899-chr9:95523684..95529726,11	MCF-7	breast:
8	chr9:95478196..95480520-chr9:95481599..95483317,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1010823	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821000	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821001	0.85[ASN][1000 genomes]
rs10821002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821003	0.85[ASN][1000 genomes]
rs10821004	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10821005	0.83[ASN][1000 genomes]
rs10821007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821010	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821011	0.84[ASN][1000 genomes]
rs10821012	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821014	0.83[ASN][1000 genomes]
rs10821015	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821016	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992402	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992403	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992404	0.80[EUR][1000 genomes]
rs10992406	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992414	0.83[ASN][1000 genomes]
rs10992416	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992417	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992418	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10992419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992420	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992422	0.85[ASN][1000 genomes]
rs10992423	0.85[ASN][1000 genomes]
rs10992426	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992430	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992431	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992432	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992433	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992434	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992436	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992437	0.84[ASN][1000 genomes]
rs10992438	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992444	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992445	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992448	0.82[ASN][1000 genomes]
rs10992451	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992453	0.84[ASN][1000 genomes]
rs10992456	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992460	0.84[ASN][1000 genomes]
rs10992461	0.84[ASN][1000 genomes]
rs10992462	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992472	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1125063	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1125064	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11533010	0.85[ASN][1000 genomes]
rs11535540	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12236393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236516	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236747	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236754	0.84[ASN][1000 genomes]
rs12236788	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12237216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12238691	0.85[ASN][1000 genomes]
rs12683839	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12683944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12684587	0.83[ASN][1000 genomes]
rs12685080	0.91[ASN][1000 genomes]
rs12685256	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685257	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685358	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12685780	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685791	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12686058	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407944	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1552908	0.92[AMR][1000 genomes]
rs1874128	0.88[AMR][1000 genomes]
rs1980705	0.87[AMR][1000 genomes]
rs2038686	0.88[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2181584	0.85[ASN][1000 genomes]
rs2181586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274413	0.88[AMR][1000 genomes]
rs2277164	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277166	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2281888	0.87[AMR][1000 genomes]
rs2296080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3203916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739605	0.84[ASN][1000 genomes]
rs41266683	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4545157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs556	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56111209	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203846	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56311406	0.84[ASN][1000 genomes]
rs57421019	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57720404	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57737182	0.84[ASN][1000 genomes]
rs58045868	0.85[AMR][1000 genomes]
rs58952648	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60173654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60457563	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60498616	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs66493272	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68022962	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68046436	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031163	0.84[ASN][1000 genomes]
rs7037961	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753802	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753803	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753804	0.84[ASN][1000 genomes]
rs7850871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7851947	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7860628	0.81[ASN][1000 genomes]
rs7862106	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7863890	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7869529	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869603	0.85[ASN][1000 genomes]
rs7875227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181065	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878610	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs879812	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs912259	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912261	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs976320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs976321	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56339669	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95469400-95482000	Weak transcription	Fetal Brain Male	brain
2	chr9:95470800-95484800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:95471000-95485400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:95471000-95485600	Strong transcription	Fetal Thymus	thymus
5	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
6	chr9:95471200-95484200	Strong transcription	Liver	Liver
7	chr9:95471200-95485000	Strong transcription	Brain Inferior Temporal Lobe	brain
8	chr9:95471200-95485200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:95471200-95485200	Strong transcription	Fetal Brain Female	brain
10	chr9:95471200-95486000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:95471400-95484800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:95471400-95485000	Strong transcription	Brain Hippocampus Middle	brain
13	chr9:95471400-95485200	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr9:95471400-95485400	Strong transcription	Brain Germinal Matrix	brain
15	chr9:95471400-95485400	Strong transcription	Gastric	stomach
16	chr9:95471400-95485600	Strong transcription	Aorta	Aorta
17	chr9:95471400-95487000	Strong transcription	Fetal Muscle Leg	muscle
18	chr9:95471400-95489000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:95471600-95485200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:95471600-95485400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:95471600-95489000	Strong transcription	Fetal Stomach	stomach
22	chr9:95471800-95485000	Strong transcription	Brain Anterior Caudate	brain
23	chr9:95471800-95485400	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:95471800-95486000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:95471800-95487600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr9:95471800-95492400	Strong transcription	Dnd41	blood
27	chr9:95472000-95484000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:95472000-95485200	Strong transcription	Lung	lung
29	chr9:95472000-95485400	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr9:95472000-95485400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:95472000-95485600	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:95472000-95489600	Strong transcription	Fetal Intestine Small	intestine
33	chr9:95472200-95485200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:95472400-95483000	Strong transcription	A549	lung
35	chr9:95472400-95485200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:95472600-95485200	Strong transcription	Brain Cingulate Gyrus	brain
37	chr9:95472800-95485400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:95473000-95485000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:95473000-95485400	Strong transcription	NHLF	lung
40	chr9:95473200-95484000	Strong transcription	Brain Angular Gyrus	brain
41	chr9:95473400-95484600	Strong transcription	Osteobl	bone
42	chr9:95474200-95485000	Strong transcription	Fetal Lung	lung
43	chr9:95474800-95482800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:95474800-95483200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr9:95474800-95483800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr9:95474800-95484800	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr9:95474800-95485800	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr9:95474800-95486200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:95475000-95482800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr9:95475000-95491600	Strong transcription	Primary T cells from cord blood	blood

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