Variant report

Variant	rs2296080
Chromosome Location	chr9:95491094-95491095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95489380..95491357-chr9:95508006..95509721,2	K562	blood:
2	chr9:95486460..95489188-chr9:95491019..95493558,2	K562	blood:
3	chr9:95489432..95492174-chr9:95505012..95506528,2	K562	blood:
4	chr9:95483115..95485698-chr9:95490750..95492999,2	MCF-7	breast:
5	chr9:95490525..95493250-chr9:95553271..95556888,4	MCF-7	breast:
6	chr9:95490365..95492955-chr9:95524565..95526650,2	K562	blood:
7	chr9:95486636..95488536-chr9:95489832..95492725,3	MCF-7	breast:
8	chr9:95486449..95488708-chr9:95489752..95492934,4	K562	blood:
9	chr9:95488191..95494776-chr9:95524763..95529525,11	MCF-7	breast:
10	chr9:95489709..95492274-chr9:95498684..95502250,4	MCF-7	breast:
11	chr9:95489925..95493228-chr9:95524628..95528796,8	MCF-7	breast:
12	chr9:95490823..95492381-chr9:95552762..95553676,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 144 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1010823	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820997	0.81[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap]
rs10820998	0.84[MEX][hapmap]
rs10821000	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10821001	0.85[ASN][1000 genomes]
rs10821002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821003	0.85[ASN][1000 genomes]
rs10821004	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10821005	0.83[ASN][1000 genomes]
rs10821007	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821009	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821011	0.84[ASN][1000 genomes]
rs10821012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821014	0.83[ASN][1000 genomes]
rs10821015	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821016	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992367	0.84[MEX][hapmap]
rs10992382	0.84[MEX][hapmap]
rs10992384	0.84[MEX][hapmap]
rs10992392	0.84[MEX][hapmap]
rs10992402	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992403	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992406	0.82[AMR][1000 genomes]
rs10992413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992414	0.82[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs10992416	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992417	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992418	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10992419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992420	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10992422	0.85[ASN][1000 genomes]
rs10992423	0.85[ASN][1000 genomes]
rs10992426	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10992427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992433	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10992434	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992437	0.84[ASN][1000 genomes]
rs10992438	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992441	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992442	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992448	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs10992451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992453	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10992456	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992460	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs10992461	0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs10992462	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992469	0.93[CEU][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs10992472	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1117670	0.84[MEX][hapmap]
rs1125063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1125064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11533010	0.85[ASN][1000 genomes]
rs11535540	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12236393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236747	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236754	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12236788	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12237216	0.82[AMR][1000 genomes]
rs12238691	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs12683839	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12683944	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12684587	0.83[ASN][1000 genomes]
rs12685080	0.93[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12685256	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685358	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12685780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12686058	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1326775	0.84[MEX][hapmap]
rs1407944	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1552908	0.87[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.92[AMR][1000 genomes]
rs1810696	0.80[CEU][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap]
rs1853468	0.84[MEX][hapmap]
rs1874128	0.87[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes]
rs1980705	0.87[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes]
rs2038686	0.88[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2148537	0.84[MEX][hapmap]
rs2181584	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2181586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274413	0.87[CEU][hapmap];0.88[AMR][1000 genomes]
rs2277164	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277166	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2281888	0.87[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes]
rs3203916	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739605	0.81[ASW][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.84[ASN][1000 genomes]
rs41266683	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4545157	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs556	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56111209	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56203846	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56311406	0.84[ASN][1000 genomes]
rs56339669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57421019	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57720404	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57737182	0.84[ASN][1000 genomes]
rs58045868	0.85[AMR][1000 genomes]
rs58952648	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs60173654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60457563	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60498616	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6479426	0.84[MEX][hapmap]
rs66493272	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68022962	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68046436	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031163	0.82[CHB][hapmap];0.87[JPT][hapmap];0.80[MEX][hapmap];0.84[ASN][1000 genomes]
rs7037961	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs753804	0.84[ASN][1000 genomes]
rs7850871	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7851947	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7857105	0.84[MEX][hapmap]
rs7860628	0.81[ASN][1000 genomes]
rs7862106	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7863882	0.84[MEX][hapmap]
rs7863890	0.87[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7864889	0.87[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7869529	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869603	0.85[ASN][1000 genomes]
rs7871537	0.93[CEU][hapmap];0.95[JPT][hapmap]
rs7875225	0.95[JPT][hapmap]
rs7875227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8181065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs878610	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs879812	0.87[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs912259	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912261	0.81[CEU][hapmap];0.84[MEX][hapmap];0.82[AMR][1000 genomes]
rs912264	0.80[CHB][hapmap]
rs971984	0.84[MEX][hapmap]
rs976320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs976321	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999632	chr9:95483885-95491267	Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2296080	BICD2	Cis_1M	lymphoblastoid	RTeQTL
rs2296080	CENPP	cis	parietal	SCAN
rs2296080	ANKRD19	cis	parietal	SCAN
rs2296080	C9orf89	cis	parietal	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
2	chr9:95471800-95492400	Strong transcription	Dnd41	blood
3	chr9:95475000-95491600	Strong transcription	Primary T cells from cord blood	blood
4	chr9:95475000-95492200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:95475600-95491800	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:95475600-95492000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:95475600-95499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:95475800-95492000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:95475800-95492200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:95479200-95498200	Weak transcription	Stomach Mucosa	stomach
11	chr9:95479400-95491600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr9:95479400-95492600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr9:95482600-95497800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:95482600-95498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:95482800-95499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:95483400-95497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:95484000-95491600	Weak transcription	Fetal Heart	heart
18	chr9:95484200-95498000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:95484600-95499400	Weak transcription	Osteobl	bone
20	chr9:95484800-95491800	Weak transcription	Fetal Brain Male	brain
21	chr9:95484800-95501800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:95485000-95491200	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr9:95485200-95491200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr9:95485600-95511600	Weak transcription	Aorta	Aorta
25	chr9:95486200-95493400	Genic enhancers	Fetal Muscle Trunk	muscle
26	chr9:95486600-95491200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:95486600-95493200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:95486800-95491200	Genic enhancers	Placenta	Placenta
29	chr9:95486800-95491800	Strong transcription	Brain Germinal Matrix	brain
30	chr9:95486800-95491800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:95487000-95491200	Strong transcription	A549	lung
32	chr9:95487000-95492400	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:95487000-95492400	Genic enhancers	Lung	lung
34	chr9:95487000-95493400	Genic enhancers	Spleen	Spleen
35	chr9:95487200-95491600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:95487200-95491600	Strong transcription	Fetal Brain Female	brain
37	chr9:95487400-95492400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr9:95487400-95493200	Genic enhancers	Esophagus	oesophagus
39	chr9:95487400-95497200	Weak transcription	Psoas Muscle	Psoas
40	chr9:95487600-95491200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr9:95487600-95491400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:95487600-95491600	Strong transcription	Fetal Lung	lung
43	chr9:95488000-95492600	Strong transcription	Gastric	stomach
44	chr9:95488200-95491400	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr9:95488200-95491600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:95488400-95491400	Strong transcription	Rectal Smooth Muscle	rectum
47	chr9:95488400-95491800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:95488400-95492200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:95488600-95491600	Genic enhancers	Right Ventricle	heart
50	chr9:95488600-95492000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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