Variant report

Variant	rs7860628
Chromosome Location	chr9:95538914-95538915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95532082..95533725-chr9:95537361..95539360,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1010823	0.83[ASN][1000 genomes]
rs1040977	0.82[EUR][1000 genomes]
rs10820998	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10821001	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821003	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821004	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10821005	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821007	0.81[ASN][1000 genomes]
rs10821010	0.83[ASN][1000 genomes]
rs10821011	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821012	0.83[ASN][1000 genomes]
rs10821014	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821015	0.83[ASN][1000 genomes]
rs10821016	0.83[ASN][1000 genomes]
rs10992390	0.86[EUR][1000 genomes]
rs10992392	0.86[EUR][1000 genomes]
rs10992396	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992404	0.82[ASN][1000 genomes]
rs10992406	0.82[ASN][1000 genomes]
rs10992407	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992408	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10992409	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992414	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992416	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992417	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992420	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992422	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992423	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992426	0.90[ASN][1000 genomes]
rs10992430	0.81[ASN][1000 genomes]
rs10992431	0.81[ASN][1000 genomes]
rs10992432	0.80[ASN][1000 genomes]
rs10992433	0.98[ASN][1000 genomes]
rs10992434	0.81[ASN][1000 genomes]
rs10992436	0.83[ASN][1000 genomes]
rs10992437	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992438	0.83[ASN][1000 genomes]
rs10992441	0.83[ASN][1000 genomes]
rs10992442	0.83[ASN][1000 genomes]
rs10992443	0.83[ASN][1000 genomes]
rs10992444	0.83[ASN][1000 genomes]
rs10992445	0.83[ASN][1000 genomes]
rs10992447	0.82[EUR][1000 genomes]
rs10992448	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992451	0.83[ASN][1000 genomes]
rs10992453	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992456	0.83[ASN][1000 genomes]
rs10992460	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992462	0.83[ASN][1000 genomes]
rs10992469	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992474	0.88[EUR][1000 genomes]
rs10992476	0.90[EUR][1000 genomes]
rs1125063	0.83[ASN][1000 genomes]
rs1125064	0.83[ASN][1000 genomes]
rs11533010	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12057034	0.89[EUR][1000 genomes]
rs12236013	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12236393	0.81[ASN][1000 genomes]
rs12236516	0.83[ASN][1000 genomes]
rs12236747	0.83[ASN][1000 genomes]
rs12236754	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12236788	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12237216	0.80[ASN][1000 genomes]
rs12238691	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12683944	0.82[ASN][1000 genomes]
rs12684076	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12684587	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12685257	0.83[ASN][1000 genomes]
rs12685358	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12685780	0.83[ASN][1000 genomes]
rs12685791	0.83[ASN][1000 genomes]
rs12686058	0.81[ASN][1000 genomes]
rs12686771	0.82[EUR][1000 genomes]
rs1323523	0.83[AMR][1000 genomes]
rs1407944	0.93[ASN][1000 genomes]
rs1555574	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16908555	0.89[EUR][1000 genomes]
rs16908560	0.89[EUR][1000 genomes]
rs17366488	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1853429	0.89[EUR][1000 genomes]
rs1853468	0.82[AMR][1000 genomes]
rs2038685	0.81[AMR][1000 genomes]
rs2181584	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2277164	0.86[ASN][1000 genomes]
rs2296080	0.81[ASN][1000 genomes]
rs2398780	0.89[EUR][1000 genomes]
rs3739605	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4141966	0.89[EUR][1000 genomes]
rs4545157	0.83[ASN][1000 genomes]
rs56111209	0.83[ASN][1000 genomes]
rs56311406	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56339669	0.81[ASN][1000 genomes]
rs57421019	0.83[ASN][1000 genomes]
rs57720404	0.83[ASN][1000 genomes]
rs57737182	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58952648	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60173654	0.83[ASN][1000 genomes]
rs60457563	0.83[ASN][1000 genomes]
rs60498616	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67601697	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68022962	0.83[ASN][1000 genomes]
rs68046436	0.83[ASN][1000 genomes]
rs7031163	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs753802	0.83[ASN][1000 genomes]
rs753803	0.83[ASN][1000 genomes]
rs753804	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs754600	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7850075	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7850871	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7851947	0.93[ASN][1000 genomes]
rs7853617	0.84[EUR][1000 genomes]
rs7855203	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7856147	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7857105	0.86[EUR][1000 genomes]
rs7857502	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7859967	0.86[EUR][1000 genomes]
rs7862106	0.81[EUR][1000 genomes]
rs7863741	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7869603	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7871537	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7875050	0.85[EUR][1000 genomes]
rs8181065	0.83[ASN][1000 genomes]
rs878610	0.83[ASN][1000 genomes]
rs912259	0.83[ASN][1000 genomes]
rs912261	0.82[ASN][1000 genomes]
rs912264	0.82[AMR][1000 genomes]
rs971984	0.82[AMR][1000 genomes]
rs976320	0.83[ASN][1000 genomes]
rs976321	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95533200-95541200	Weak transcription	Left Ventricle	heart
2	chr9:95533400-95541200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:95533400-95543200	Weak transcription	Esophagus	oesophagus
4	chr9:95536600-95539000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:95537200-95543800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:95537600-95544000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:95538200-95539000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:95538200-95543800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:95538400-95541000	Weak transcription	Primary B cells from cord blood	blood
10	chr9:95538800-95543600	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links