Variant report

Variant	rs7863741
Chromosome Location	chr9:95552379-95552380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95548519..95551423-chr9:95551697..95555504,3	K562	blood:
2	chr9:95548536..95551423-chr9:95551697..95554622,2	K562	blood:
3	chr9:95478553..95479822-chr9:95552363..95553622,4	MCF-7	breast:
4	chr9:95262989..95265065-chr9:95551736..95554056,2	MCF-7	breast:
5	chr9:95488503..95490523-chr9:95550611..95553154,2	MCF-7	breast:
6	chr9:95525165..95529310-chr9:95549740..95553522,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10117377	0.84[ASN][1000 genomes]
rs1040977	0.83[EUR][1000 genomes]
rs10820998	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10821001	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821003	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821004	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821005	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821011	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821014	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10821017	0.82[ASN][1000 genomes]
rs10992390	0.87[EUR][1000 genomes]
rs10992392	0.87[EUR][1000 genomes]
rs10992396	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992407	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992408	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992409	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992412	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992414	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992416	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992417	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992420	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992422	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992423	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992437	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10992447	0.81[EUR][1000 genomes]
rs10992448	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992453	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992460	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992461	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992469	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992474	0.89[EUR][1000 genomes]
rs10992476	0.91[EUR][1000 genomes]
rs11533010	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12057034	0.90[EUR][1000 genomes]
rs12236013	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12236754	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12236788	0.83[AMR][1000 genomes]
rs12238691	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12684076	0.93[EUR][1000 genomes]
rs12684587	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12685358	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12686771	0.81[EUR][1000 genomes]
rs1323523	0.81[AMR][1000 genomes]
rs1555574	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16908555	0.90[EUR][1000 genomes]
rs16908560	0.90[EUR][1000 genomes]
rs17366488	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1853429	0.90[EUR][1000 genomes]
rs1853468	0.80[AMR][1000 genomes]
rs2181584	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2398780	0.90[EUR][1000 genomes]
rs3739605	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4141966	0.90[EUR][1000 genomes]
rs56311406	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57737182	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58952648	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60498616	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67601697	0.84[EUR][1000 genomes]
rs7031163	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs753804	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs754600	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7850075	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7853617	0.85[EUR][1000 genomes]
rs7855203	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7856147	0.85[EUR][1000 genomes]
rs7857105	0.87[EUR][1000 genomes]
rs7857502	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7859967	0.87[EUR][1000 genomes]
rs7860628	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7868651	0.82[ASN][1000 genomes]
rs7869603	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7871537	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7875050	0.85[EUR][1000 genomes]
rs7875225	0.84[ASN][1000 genomes]
rs912264	0.80[AMR][1000 genomes]
rs971984	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95546000-95553000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95546000-95553000	Weak transcription	NHEK	skin
4	chr9:95552000-95553600	Enhancers	Primary neutrophils fromperipheralblood	blood

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