Variant report

Variant	rs11533010
Chromosome Location	chr9:95464552-95464553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 158 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs1010823	0.83[ASN][1000 genomes]
rs1040977	0.80[EUR][1000 genomes]
rs10491806	0.83[AMR][1000 genomes]
rs10820998	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821001	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821002	0.86[ASN][1000 genomes]
rs10821003	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821005	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821007	0.85[ASN][1000 genomes]
rs10821009	0.83[ASN][1000 genomes]
rs10821010	0.83[ASN][1000 genomes]
rs10821011	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821012	0.83[ASN][1000 genomes]
rs10821014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10821015	0.83[ASN][1000 genomes]
rs10821016	0.83[ASN][1000 genomes]
rs10992367	0.84[AMR][1000 genomes]
rs10992380	0.88[AMR][1000 genomes]
rs10992384	0.86[AMR][1000 genomes]
rs10992390	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992392	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992394	0.82[ASN][1000 genomes]
rs10992396	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992404	0.88[ASN][1000 genomes]
rs10992406	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10992407	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992408	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992409	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992412	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10992413	0.85[ASN][1000 genomes]
rs10992414	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992416	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992417	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992418	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10992419	0.86[ASN][1000 genomes]
rs10992420	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992423	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992426	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992427	0.86[ASN][1000 genomes]
rs10992430	0.85[ASN][1000 genomes]
rs10992431	0.85[ASN][1000 genomes]
rs10992432	0.84[ASN][1000 genomes]
rs10992433	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992434	0.85[ASN][1000 genomes]
rs10992436	0.83[ASN][1000 genomes]
rs10992437	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992438	0.83[ASN][1000 genomes]
rs10992441	0.82[ASN][1000 genomes]
rs10992442	0.83[ASN][1000 genomes]
rs10992443	0.83[ASN][1000 genomes]
rs10992444	0.83[ASN][1000 genomes]
rs10992445	0.83[ASN][1000 genomes]
rs10992447	0.84[EUR][1000 genomes]
rs10992448	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992451	0.83[ASN][1000 genomes]
rs10992453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992456	0.83[ASN][1000 genomes]
rs10992460	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992461	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992462	0.83[ASN][1000 genomes]
rs10992474	0.87[EUR][1000 genomes]
rs10992476	0.88[EUR][1000 genomes]
rs1125063	0.83[ASN][1000 genomes]
rs1125064	0.83[ASN][1000 genomes]
rs11535540	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12057034	0.88[EUR][1000 genomes]
rs12236013	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12236393	0.85[ASN][1000 genomes]
rs12236516	0.83[ASN][1000 genomes]
rs12236747	0.83[ASN][1000 genomes]
rs12236754	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12236788	0.96[ASN][1000 genomes]
rs12237216	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12238691	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683944	0.82[ASN][1000 genomes]
rs12684076	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12684587	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685080	0.80[AMR][1000 genomes]
rs12685256	0.86[ASN][1000 genomes]
rs12685257	0.83[ASN][1000 genomes]
rs12685358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685780	0.83[ASN][1000 genomes]
rs12685791	0.83[ASN][1000 genomes]
rs12686058	0.81[ASN][1000 genomes]
rs12686771	0.84[EUR][1000 genomes]
rs12686780	0.86[AMR][1000 genomes]
rs12686781	0.87[AMR][1000 genomes]
rs1323523	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1326775	0.87[AMR][1000 genomes]
rs1407944	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1575460	0.87[AMR][1000 genomes]
rs16908555	0.88[EUR][1000 genomes]
rs16908560	0.88[EUR][1000 genomes]
rs17366488	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1853429	0.88[EUR][1000 genomes]
rs1853468	0.92[AMR][1000 genomes]
rs2038685	0.90[AMR][1000 genomes]
rs2088054	0.82[AMR][1000 genomes]
rs2131919	0.84[AMR][1000 genomes]
rs2148537	0.87[AMR][1000 genomes]
rs2172716	0.84[AMR][1000 genomes]
rs2181584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181586	0.86[ASN][1000 genomes]
rs2277164	0.87[ASN][1000 genomes]
rs2296080	0.85[ASN][1000 genomes]
rs2398780	0.88[EUR][1000 genomes]
rs3203916	0.86[ASN][1000 genomes]
rs3739605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4141966	0.88[EUR][1000 genomes]
rs4545157	0.83[ASN][1000 genomes]
rs556	0.86[ASN][1000 genomes]
rs56111209	0.83[ASN][1000 genomes]
rs56203846	0.86[ASN][1000 genomes]
rs56311406	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56339669	0.85[ASN][1000 genomes]
rs57421019	0.83[ASN][1000 genomes]
rs57720404	0.83[ASN][1000 genomes]
rs57737182	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58952648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60173654	0.83[ASN][1000 genomes]
rs60457563	0.83[ASN][1000 genomes]
rs60498616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66493272	0.84[ASN][1000 genomes]
rs67601697	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68022962	0.83[ASN][1000 genomes]
rs68046436	0.83[ASN][1000 genomes]
rs7031163	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7037961	0.86[ASN][1000 genomes]
rs753802	0.83[ASN][1000 genomes]
rs753803	0.83[ASN][1000 genomes]
rs753804	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs754600	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7850075	0.90[EUR][1000 genomes]
rs7850871	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7851947	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7853617	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7855203	0.85[EUR][1000 genomes]
rs7856147	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7857105	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7857502	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7859967	0.84[EUR][1000 genomes]
rs7860628	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7862106	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7863741	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7869529	0.86[ASN][1000 genomes]
rs7869603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7875050	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7875227	0.83[ASN][1000 genomes]
rs8181065	0.83[ASN][1000 genomes]
rs878610	0.83[ASN][1000 genomes]
rs912259	0.83[ASN][1000 genomes]
rs912261	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs912264	0.92[AMR][1000 genomes]
rs971984	0.92[AMR][1000 genomes]
rs976320	0.83[ASN][1000 genomes]
rs976321	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11533010	CENPP	cis	multi-tissue	Pritchard

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95458400-95466400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95460800-95473000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:95461000-95466800	Weak transcription	Primary T cells from cord blood	blood
4	chr9:95461200-95471200	Weak transcription	Fetal Brain Female	brain
5	chr9:95461200-95472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:95461400-95468400	Weak transcription	GM12878-XiMat	blood
7	chr9:95461400-95471200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:95461400-95471400	Weak transcription	Aorta	Aorta
9	chr9:95461400-95471400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:95461400-95472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:95461600-95468200	Weak transcription	Primary B cells from cord blood	blood
12	chr9:95461600-95469000	Weak transcription	Esophagus	oesophagus
13	chr9:95461800-95471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:95463600-95466200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:95463800-95466800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:95464000-95466400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:95464000-95471800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:95464200-95466400	Weak transcription	Fetal Thymus	thymus

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