Variant report

Variant	rs2172716
Chromosome Location	chr9:95309873-95309874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10491806	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820998	0.90[AMR][1000 genomes]
rs10821001	0.84[AMR][1000 genomes]
rs10821003	0.84[AMR][1000 genomes]
rs10821004	0.84[AMR][1000 genomes]
rs10821005	0.84[AMR][1000 genomes]
rs10821011	0.83[AMR][1000 genomes]
rs10821014	0.84[AMR][1000 genomes]
rs10992367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992380	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992382	0.81[ASN][1000 genomes]
rs10992384	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992390	0.86[AMR][1000 genomes]
rs10992392	0.86[AMR][1000 genomes]
rs10992396	0.85[AMR][1000 genomes]
rs10992407	0.85[AMR][1000 genomes]
rs10992408	0.80[AMR][1000 genomes]
rs10992409	0.80[AMR][1000 genomes]
rs10992412	0.85[AMR][1000 genomes]
rs10992414	0.84[AMR][1000 genomes]
rs10992416	0.84[AMR][1000 genomes]
rs10992417	0.84[AMR][1000 genomes]
rs10992420	0.84[AMR][1000 genomes]
rs10992422	0.84[AMR][1000 genomes]
rs10992423	0.84[AMR][1000 genomes]
rs10992437	0.84[AMR][1000 genomes]
rs11533010	0.84[AMR][1000 genomes]
rs12236013	0.90[AMR][1000 genomes]
rs12238691	0.84[AMR][1000 genomes]
rs12685358	0.84[AMR][1000 genomes]
rs12686780	0.86[AMR][1000 genomes]
rs12686781	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1323523	0.90[AMR][1000 genomes]
rs1326775	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1575460	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17366488	0.90[AMR][1000 genomes]
rs1853468	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2038685	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2088054	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148537	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2181584	0.84[AMR][1000 genomes]
rs3739605	0.84[AMR][1000 genomes]
rs58952648	0.84[AMR][1000 genomes]
rs60498616	0.84[AMR][1000 genomes]
rs67601697	0.87[AMR][1000 genomes]
rs753804	0.84[AMR][1000 genomes]
rs754600	0.88[AMR][1000 genomes]
rs7853617	0.84[AMR][1000 genomes]
rs7856147	0.88[AMR][1000 genomes]
rs7857105	0.86[AMR][1000 genomes]
rs7857502	0.90[AMR][1000 genomes]
rs7863882	0.81[ASN][1000 genomes]
rs7869603	0.84[AMR][1000 genomes]
rs7875050	0.84[AMR][1000 genomes]
rs912264	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs971984	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95302000-95320800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:95307400-95320800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95308600-95324000	Weak transcription	Fetal Intestine Small	intestine

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