Variant report

Variant	rs56203846
Chromosome Location	chr9:95470481-95470482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95467325..95471055-chr9:95471061..95474660,4	K562	blood:
2	chr9:95426803..95428983-chr9:95470405..95473212,2	K562	blood:
3	chr9:95458695..95460331-chr9:95470006..95472763,2	MCF-7	breast:
4	chr9:95468926..95471611-chr9:95503130..95505325,2	MCF-7	breast:
5	chr9:95403595..95406379-chr9:95468606..95470855,2	MCF-7	breast:
6	chr9:95464995..95467333-chr9:95469137..95470873,3	K562	blood:
7	chr9:95431302..95433776-chr9:95467339..95472233,7	MCF-7	breast:
8	chr9:95429303..95432916-chr9:95467398..95470699,6	MCF-7	breast:
9	chr9:95469711..95472136-chr9:95473225..95475708,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1010823	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821000	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821001	0.86[ASN][1000 genomes]
rs10821002	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821003	0.86[ASN][1000 genomes]
rs10821004	0.86[ASN][1000 genomes]
rs10821005	0.85[ASN][1000 genomes]
rs10821007	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821011	0.82[ASN][1000 genomes]
rs10821012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821014	0.82[ASN][1000 genomes]
rs10821015	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821016	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992402	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992403	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992404	0.80[EUR][1000 genomes]
rs10992406	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992414	0.85[ASN][1000 genomes]
rs10992416	0.86[ASN][1000 genomes]
rs10992417	0.86[ASN][1000 genomes]
rs10992418	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10992419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992420	0.86[ASN][1000 genomes]
rs10992422	0.86[ASN][1000 genomes]
rs10992423	0.86[ASN][1000 genomes]
rs10992426	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992432	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992433	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10992434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992437	0.82[ASN][1000 genomes]
rs10992438	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992442	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992445	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992448	0.81[ASN][1000 genomes]
rs10992451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992453	0.82[ASN][1000 genomes]
rs10992456	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992460	0.82[ASN][1000 genomes]
rs10992461	0.82[ASN][1000 genomes]
rs10992462	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992472	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1125063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1125064	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11533010	0.86[ASN][1000 genomes]
rs11535540	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12236393	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236516	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12236747	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12236754	0.82[ASN][1000 genomes]
rs12236788	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12237216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12238691	0.84[ASN][1000 genomes]
rs12683839	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12683944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12684587	0.82[ASN][1000 genomes]
rs12685080	0.93[ASN][1000 genomes]
rs12685256	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685257	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12685358	0.86[ASN][1000 genomes]
rs12685780	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12685791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12686058	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1407944	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1552908	0.92[AMR][1000 genomes]
rs1874128	0.88[AMR][1000 genomes]
rs1980705	0.87[AMR][1000 genomes]
rs2038686	0.88[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2181584	0.86[ASN][1000 genomes]
rs2181586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274413	0.88[AMR][1000 genomes]
rs2277164	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277166	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2281888	0.87[AMR][1000 genomes]
rs2296080	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3203916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3739605	0.85[ASN][1000 genomes]
rs41266683	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4545157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs556	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56111209	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56311406	0.82[ASN][1000 genomes]
rs56339669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57421019	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57720404	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57737182	0.82[ASN][1000 genomes]
rs58045868	0.85[AMR][1000 genomes]
rs58952648	0.85[ASN][1000 genomes]
rs60173654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60457563	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60498616	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs66493272	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68022962	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68046436	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031163	0.82[ASN][1000 genomes]
rs7037961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753802	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753804	0.82[ASN][1000 genomes]
rs7850871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7851947	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7862106	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7863890	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7869529	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869603	0.84[ASN][1000 genomes]
rs7875227	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8181065	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878610	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs879812	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs912259	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912261	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs976320	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs976321	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56203846	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95460800-95473000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:95461200-95471200	Weak transcription	Fetal Brain Female	brain
3	chr9:95461200-95472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:95461400-95471200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:95461400-95471400	Weak transcription	Aorta	Aorta
6	chr9:95461400-95471400	Weak transcription	Brain Germinal Matrix	brain
7	chr9:95461400-95472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:95461800-95471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:95464000-95471800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:95464600-95471400	Weak transcription	Fetal Intestine Large	intestine
11	chr9:95464600-95473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:95464800-95470800	Weak transcription	HSMM	muscle
13	chr9:95464800-95471200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:95464800-95471200	Weak transcription	Placenta	Placenta
15	chr9:95464800-95474600	Weak transcription	K562	blood
16	chr9:95464800-95477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:95465000-95471400	Weak transcription	Fetal Muscle Leg	muscle
18	chr9:95465000-95472400	Weak transcription	A549	lung
19	chr9:95465200-95471000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:95465200-95471200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:95465200-95471200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:95465200-95471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:95465200-95471600	Weak transcription	Fetal Stomach	stomach
24	chr9:95465200-95471800	Weak transcription	Brain Anterior Caudate	brain
25	chr9:95465200-95472200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:95465200-95474200	Weak transcription	Hela-S3	cervix
27	chr9:95465400-95470800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:95465400-95471200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr9:95465400-95471400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:95465400-95471400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr9:95465600-95471000	Weak transcription	Thymus	Thymus
32	chr9:95465600-95473400	Weak transcription	NHDF-Ad	bronchial
33	chr9:95465800-95471400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr9:95465800-95471800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:95466800-95471200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:95466800-95472800	Enhancers	HMEC	breast
37	chr9:95467000-95471000	Weak transcription	HSMMtube	muscle
38	chr9:95467000-95472000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:95467200-95471000	Weak transcription	Fetal Thymus	thymus
40	chr9:95467200-95471400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:95467400-95471000	Weak transcription	Primary T cells from cord blood	blood
42	chr9:95467400-95472000	Weak transcription	Fetal Intestine Small	intestine
43	chr9:95467400-95472400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr9:95467600-95471400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:95467600-95471400	Weak transcription	Gastric	stomach
46	chr9:95467600-95471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:95467600-95471600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr9:95467600-95471800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:95467600-95472800	Weak transcription	Right Ventricle	heart
50	chr9:95468600-95471600	Enhancers	HUVEC	blood vessel

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