Variant report

Variant	rs7869529
Chromosome Location	chr9:95471261-95471262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95467325..95471055-chr9:95471061..95474660,4	K562	blood:
2	chr9:95426803..95428983-chr9:95470405..95473212,2	K562	blood:
3	chr9:95471128..95473900-chr9:95482099..95486004,3	K562	blood:
4	chr9:95458695..95460331-chr9:95470006..95472763,2	MCF-7	breast:
5	chr9:95468926..95471611-chr9:95503130..95505325,2	MCF-7	breast:
6	chr9:95431302..95433776-chr9:95467339..95472233,7	MCF-7	breast:
7	chr9:95469711..95472136-chr9:95473225..95475708,2	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1010823	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821000	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10821001	0.86[ASN][1000 genomes]
rs10821002	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821003	0.86[ASN][1000 genomes]
rs10821004	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10821005	0.85[ASN][1000 genomes]
rs10821007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821009	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821011	0.82[ASN][1000 genomes]
rs10821012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821014	0.82[ASN][1000 genomes]
rs10821015	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821016	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992402	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992403	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992404	0.80[EUR][1000 genomes]
rs10992406	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10992413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992414	0.85[ASN][1000 genomes]
rs10992416	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10992417	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10992418	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10992419	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992420	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10992422	0.86[ASN][1000 genomes]
rs10992423	0.86[ASN][1000 genomes]
rs10992426	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992427	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992431	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992433	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10992434	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992436	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992437	0.82[ASN][1000 genomes]
rs10992438	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992441	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992443	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992448	0.81[ASN][1000 genomes]
rs10992451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992453	0.82[ASN][1000 genomes]
rs10992456	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992460	0.82[ASN][1000 genomes]
rs10992461	0.82[ASN][1000 genomes]
rs10992462	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992472	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1125063	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1125064	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11533010	0.86[ASN][1000 genomes]
rs11535540	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12236393	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236516	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12236747	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12236754	0.82[ASN][1000 genomes]
rs12236788	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12237216	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12238691	0.84[ASN][1000 genomes]
rs12683839	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12683944	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12684587	0.82[ASN][1000 genomes]
rs12685080	0.93[ASN][1000 genomes]
rs12685256	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12685257	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12685358	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12685780	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12685791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12686058	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1407944	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1552908	0.92[AMR][1000 genomes]
rs1874128	0.88[AMR][1000 genomes]
rs1980705	0.87[AMR][1000 genomes]
rs2038686	0.88[AMR][1000 genomes]
rs2088055	0.82[AMR][1000 genomes]
rs2181584	0.86[ASN][1000 genomes]
rs2181586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274413	0.88[AMR][1000 genomes]
rs2277164	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277166	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2281888	0.87[AMR][1000 genomes]
rs2296080	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3203916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3739605	0.85[ASN][1000 genomes]
rs41266683	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4545157	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56111209	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56203846	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311406	0.82[ASN][1000 genomes]
rs56339669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57421019	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57720404	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57737182	0.82[ASN][1000 genomes]
rs58045868	0.85[AMR][1000 genomes]
rs58952648	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60173654	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60457563	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60498616	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs66493272	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68022962	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68046436	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031163	0.82[ASN][1000 genomes]
rs7037961	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753802	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753803	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs753804	0.82[ASN][1000 genomes]
rs7850871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7851947	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7862106	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7863890	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864889	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7869603	0.84[ASN][1000 genomes]
rs7875227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8181065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878610	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs879812	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs912259	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs912261	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs976320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs976321	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7869529	BICD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95460800-95473000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:95461200-95472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr9:95461400-95471400	Weak transcription	Aorta	Aorta
4	chr9:95461400-95471400	Weak transcription	Brain Germinal Matrix	brain
5	chr9:95461400-95472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:95464000-95471800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:95464600-95471400	Weak transcription	Fetal Intestine Large	intestine
8	chr9:95464600-95473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:95464800-95474600	Weak transcription	K562	blood
10	chr9:95464800-95477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:95465000-95471400	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:95465000-95472400	Weak transcription	A549	lung
13	chr9:95465200-95471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:95465200-95471600	Weak transcription	Fetal Stomach	stomach
15	chr9:95465200-95471800	Weak transcription	Brain Anterior Caudate	brain
16	chr9:95465200-95472200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:95465200-95474200	Weak transcription	Hela-S3	cervix
18	chr9:95465400-95471400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:95465400-95471400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:95465600-95473400	Weak transcription	NHDF-Ad	bronchial
21	chr9:95465800-95471400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:95465800-95471800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:95466800-95472800	Enhancers	HMEC	breast
24	chr9:95467000-95472000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr9:95467200-95471400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr9:95467400-95472000	Weak transcription	Fetal Intestine Small	intestine
27	chr9:95467400-95472400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:95467600-95471400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:95467600-95471400	Weak transcription	Gastric	stomach
30	chr9:95467600-95471600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:95467600-95471600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:95467600-95471800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr9:95467600-95472800	Weak transcription	Right Ventricle	heart
34	chr9:95468600-95471600	Enhancers	HUVEC	blood vessel
35	chr9:95469000-95472600	Weak transcription	Ovary	ovary
36	chr9:95469000-95473000	Weak transcription	Brain Substantia Nigra	brain
37	chr9:95469000-95473400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:95469000-95473400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr9:95469000-95477200	Weak transcription	Stomach Mucosa	stomach
40	chr9:95469200-95471400	Weak transcription	Primary B cells from cord blood	blood
41	chr9:95469200-95471600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr9:95469200-95471800	Weak transcription	GM12878-XiMat	blood
43	chr9:95469200-95472000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:95469200-95473200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr9:95469200-95473200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr9:95469200-95475600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr9:95469200-95477400	Weak transcription	Right Atrium	heart
48	chr9:95469200-95480400	Weak transcription	Psoas Muscle	Psoas
49	chr9:95469400-95472000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:95469400-95472000	Weak transcription	Esophagus	oesophagus

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