Variant report

Variant	rs61629858
Chromosome Location	chr3:112654447-112654448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2029315	0.91[ASN][1000 genomes]
rs62263730	0.91[ASN][1000 genomes]
rs62263759	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6780406	0.91[ASN][1000 genomes]
rs6805959	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7432373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112652000-112658800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:112652200-112655600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:112652200-112656600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr3:112653200-112656600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:112653600-112655400	ZNF genes & repeats	Primary T cells from cord blood	blood
6	chr3:112654400-112654600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:112654400-112654800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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